Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 RARRES2P4-201ENST00000514074 484 ntBASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 GABARAPL3-202ENST00000624044 1851 ntBASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
AP4E1Q9UPM8 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 LINC01521-201ENST00000504184 1943 ntBASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 AC020907.5-201ENST00000624372 1936 ntBASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 CYP21A1P-202ENST00000354927 1481 ntBASIC21.19■□□□□ 0.98
AP4E1Q9UPM8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 CDCA4P2-201ENST00000441182 718 ntBASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
AP4E1Q9UPM8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 AC069236.1-201ENST00000604339 616 ntBASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 AC005181.1-201ENST00000604782 1256 ntBASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.17■□□□□ 0.98
AP4E1Q9UPM8 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 KRT8P36-201ENST00000489121 1440 ntBASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 AC087633.2-202ENST00000565166 1439 ntBASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
AP4E1Q9UPM8 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 AC092720.2-201ENST00000602388 1665 ntBASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 PGM5P4-201ENST00000421970 445 ntBASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.15■□□□□ 0.98
AP4E1Q9UPM8 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms