Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
CISHQ9NSE2 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CISHQ9NSE2 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CISHQ9NSE2 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.8■■□□□ 1.08
CISHQ9NSE2 PGM5P4-201ENST00000421970 445 ntBASIC21.8■■□□□ 1.08
CISHQ9NSE2 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.8■■□□□ 1.08
CISHQ9NSE2 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CISHQ9NSE2 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.8■■□□□ 1.08
CISHQ9NSE2 AL356652.1-201ENST00000615962 565 ntBASIC21.8■■□□□ 1.08
CISHQ9NSE2 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CISHQ9NSE2 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.8■■□□□ 1.08
CISHQ9NSE2 MKRN4P-201ENST00000444706 1521 ntBASIC21.8■■□□□ 1.08
CISHQ9NSE2 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.8■■□□□ 1.08
CISHQ9NSE2 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
CISHQ9NSE2 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CISHQ9NSE2 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 FEM1AP1-201ENST00000431297 1995 ntBASIC21.79■■□□□ 1.08
CISHQ9NSE2 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.79■■□□□ 1.08
CISHQ9NSE2 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CISHQ9NSE2 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CISHQ9NSE2 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CISHQ9NSE2 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CISHQ9NSE2 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 AL157384.1-201ENST00000445995 2473 ntBASIC21.78■■□□□ 1.08
CISHQ9NSE2 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CISHQ9NSE2 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 GPX1P1-201ENST00000388829 606 ntBASIC21.78■■□□□ 1.08
CISHQ9NSE2 KRT18P68-201ENST00000392293 1000 ntBASIC21.78■■□□□ 1.08
CISHQ9NSE2 GUSBP6-202ENST00000438529 1198 ntBASIC21.78■■□□□ 1.08
CISHQ9NSE2 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CISHQ9NSE2 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.78■■□□□ 1.08
CISHQ9NSE2 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CISHQ9NSE2 AC073314.1-201ENST00000568729 2216 ntBASIC21.78■■□□□ 1.08
CISHQ9NSE2 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CISHQ9NSE2 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CISHQ9NSE2 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.77■■□□□ 1.08
CISHQ9NSE2 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CISHQ9NSE2 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
CISHQ9NSE2 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.77■■□□□ 1.08
CISHQ9NSE2 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CISHQ9NSE2 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CISHQ9NSE2 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CISHQ9NSE2 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CISHQ9NSE2 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.77■■□□□ 1.08
CISHQ9NSE2 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.08
CISHQ9NSE2 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CISHQ9NSE2 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.77■■□□□ 1.08
CISHQ9NSE2 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CISHQ9NSE2 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CISHQ9NSE2 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CISHQ9NSE2 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
CISHQ9NSE2 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 KRT17P1-201ENST00000399211 1546 ntBASIC21.76■■□□□ 1.07
CISHQ9NSE2 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 TSPY6P-201ENST00000448518 926 ntBASIC21.76■■□□□ 1.07
CISHQ9NSE2 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.76■■□□□ 1.07
CISHQ9NSE2 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.76■■□□□ 1.07
CISHQ9NSE2 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.76■■□□□ 1.07
CISHQ9NSE2 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CISHQ9NSE2 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CISHQ9NSE2 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CISHQ9NSE2 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CISHQ9NSE2 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.75■■□□□ 1.07
CISHQ9NSE2 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms