Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 GPX1P1-201ENST00000388829 606 ntBASIC21.02■□□□□ 0.96
USP29Q9HBJ7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 MIR2861-201ENST00000636310 90 ntBASIC21.02■□□□□ 0.96
USP29Q9HBJ7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.02■□□□□ 0.96
USP29Q9HBJ7 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
USP29Q9HBJ7 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
USP29Q9HBJ7 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
USP29Q9HBJ7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
USP29Q9HBJ7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
USP29Q9HBJ7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
USP29Q9HBJ7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
USP29Q9HBJ7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 PKD1P6-201ENST00000343738 4769 ntBASIC21.01■□□□□ 0.95
USP29Q9HBJ7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 MIR663A-201ENST00000385250 93 ntBASIC21.01■□□□□ 0.95
USP29Q9HBJ7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 AC231657.2-201ENST00000624556 255 ntBASIC21.01■□□□□ 0.95
USP29Q9HBJ7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.01■□□□□ 0.95
USP29Q9HBJ7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
USP29Q9HBJ7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
USP29Q9HBJ7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21■□□□□ 0.95
USP29Q9HBJ7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 MFSD11-216ENST00000590393 1141 ntBASIC21■□□□□ 0.95
USP29Q9HBJ7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21■□□□□ 0.95
USP29Q9HBJ7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21■□□□□ 0.95
USP29Q9HBJ7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
USP29Q9HBJ7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21■□□□□ 0.95
USP29Q9HBJ7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP29Q9HBJ7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 AL355802.2-201ENST00000402069 882 ntBASIC20.99■□□□□ 0.95
USP29Q9HBJ7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 UBE2DNL-204ENST00000602536 740 ntBASIC20.99■□□□□ 0.95
USP29Q9HBJ7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP29Q9HBJ7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 AL391422.3-201ENST00000603791 2761 ntBASIC20.98■□□□□ 0.95
USP29Q9HBJ7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms