Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 RPS2P4-201ENST00000476944 856 ntBASIC21.25■□□□□ 0.99
EBF3Q9H4W6 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 AC116050.2-201ENST00000612102 1779 ntBASIC21.25■□□□□ 0.99
EBF3Q9H4W6 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.25■□□□□ 0.99
EBF3Q9H4W6 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
EBF3Q9H4W6 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 AC092667.1-201ENST00000434301 2586 ntBASIC21.23■□□□□ 0.99
EBF3Q9H4W6 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.23■□□□□ 0.99
EBF3Q9H4W6 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 AC026310.3-201ENST00000625186 2373 ntBASIC21.22■□□□□ 0.99
EBF3Q9H4W6 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 AL596275.1-201ENST00000423464 877 ntBASIC21.22■□□□□ 0.99
EBF3Q9H4W6 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 AL359736.2-201ENST00000621992 437 ntBASIC21.22■□□□□ 0.99
EBF3Q9H4W6 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
EBF3Q9H4W6 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 PKD1P6-201ENST00000343738 4769 ntBASIC21.21■□□□□ 0.99
EBF3Q9H4W6 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 AC105020.6-201ENST00000621523 1217 ntBASIC21.21■□□□□ 0.99
EBF3Q9H4W6 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
EBF3Q9H4W6 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms