Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC140Q96MF4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 AC087633.2-202ENST00000565166 1439 ntBASIC15.81■□□□□ 0.12
CCDC140Q96MF4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 AC069236.1-201ENST00000604339 616 ntBASIC15.81■□□□□ 0.12
CCDC140Q96MF4 AC005181.1-201ENST00000604782 1256 ntBASIC15.81■□□□□ 0.12
CCDC140Q96MF4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC140Q96MF4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC140Q96MF4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 KRT8P36-201ENST00000489121 1440 ntBASIC15.79■□□□□ 0.12
CCDC140Q96MF4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 RAP2CP1-201ENST00000605103 478 ntBASIC15.79■□□□□ 0.12
CCDC140Q96MF4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 AC092720.2-201ENST00000602388 1665 ntBASIC15.79■□□□□ 0.12
CCDC140Q96MF4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC15.79■□□□□ 0.12
CCDC140Q96MF4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC140Q96MF4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms