Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC15.27■□□□□ 0.04
LINC00477Q96M19 AC005837.3-201ENST00000612163 286 ntBASIC15.27■□□□□ 0.04
LINC00477Q96M19 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC15.27■□□□□ 0.03
LINC00477Q96M19 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC15.27■□□□□ 0.03
LINC00477Q96M19 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
LINC00477Q96M19 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LINC00477Q96M19 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LINC00477Q96M19 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.27■□□□□ 0.03
LINC00477Q96M19 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 NAA20-201ENST00000310450 920 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 STOX2-205ENST00000513034 807 ntTSL 3 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00477Q96M19 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LINC00477Q96M19 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 CCDC92B-201ENST00000575506 885 ntBASIC15.25■□□□□ 0.03
LINC00477Q96M19 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 AP001160.3-201ENST00000601484 763 ntBASIC15.25■□□□□ 0.03
LINC00477Q96M19 MIR2861-201ENST00000636310 90 ntBASIC15.25■□□□□ 0.03
LINC00477Q96M19 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC00477Q96M19 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LINC00477Q96M19 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC00477Q96M19 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC00477Q96M19 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC00477Q96M19 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 PTPA-214ENST00000423100 988 ntTSL 2 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 AC123595.1-201ENST00000440769 1046 ntBASIC15.24■□□□□ 0.03
LINC00477Q96M19 AC105265.2-201ENST00000467189 838 ntBASIC15.24■□□□□ 0.03
LINC00477Q96M19 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC00477Q96M19 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LINC00477Q96M19 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC00477Q96M19 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
LINC00477Q96M19 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
LINC00477Q96M19 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC15.23■□□□□ 0.03
LINC00477Q96M19 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LINC00477Q96M19 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC15.23■□□□□ 0.03
LINC00477Q96M19 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LINC00477Q96M19 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
LINC00477Q96M19 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LINC00477Q96M19 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 AC104187.1-201ENST00000607510 612 ntBASIC15.23■□□□□ 0.03
LINC00477Q96M19 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LINC00477Q96M19 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC00477Q96M19 AL121603.2-201ENST00000557373 2117 ntBASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms