Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS50Q96JG6 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS50Q96JG6 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS50Q96JG6 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.87■□□□□ 0.77
VPS50Q96JG6 SLC7A5P1-201ENST00000568957 537 ntBASIC19.87■□□□□ 0.77
VPS50Q96JG6 MFSD11-216ENST00000590393 1141 ntBASIC19.87■□□□□ 0.77
VPS50Q96JG6 UBE2DNL-204ENST00000602536 740 ntBASIC19.87■□□□□ 0.77
VPS50Q96JG6 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS50Q96JG6 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
VPS50Q96JG6 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VPS50Q96JG6 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS50Q96JG6 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS50Q96JG6 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS50Q96JG6 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 HLA-L-209ENST00000420110 1011 ntBASIC19.86■□□□□ 0.77
VPS50Q96JG6 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 EEF1DP3-203ENST00000566025 782 ntBASIC19.86■□□□□ 0.77
VPS50Q96JG6 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
VPS50Q96JG6 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS50Q96JG6 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS50Q96JG6 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS50Q96JG6 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS50Q96JG6 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.85■□□□□ 0.77
VPS50Q96JG6 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS50Q96JG6 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS50Q96JG6 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS50Q96JG6 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS50Q96JG6 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS50Q96JG6 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 POU5F1P4-201ENST00000413175 1085 ntBASIC19.84■□□□□ 0.77
VPS50Q96JG6 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS50Q96JG6 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS50Q96JG6 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 AL049796.1-201ENST00000565336 1766 ntBASIC19.84■□□□□ 0.77
VPS50Q96JG6 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS50Q96JG6 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
VPS50Q96JG6 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
VPS50Q96JG6 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS50Q96JG6 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
VPS50Q96JG6 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS50Q96JG6 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
VPS50Q96JG6 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS50Q96JG6 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
VPS50Q96JG6 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.83■□□□□ 0.77
VPS50Q96JG6 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.83■□□□□ 0.77
VPS50Q96JG6 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
VPS50Q96JG6 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS50Q96JG6 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS50Q96JG6 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS50Q96JG6 MIR663A-201ENST00000385250 93 ntBASIC19.83■□□□□ 0.77
VPS50Q96JG6 GPX1P1-201ENST00000388829 606 ntBASIC19.83■□□□□ 0.77
VPS50Q96JG6 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS50Q96JG6 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS50Q96JG6 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS50Q96JG6 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS50Q96JG6 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS50Q96JG6 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.83■□□□□ 0.76
VPS50Q96JG6 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VPS50Q96JG6 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS50Q96JG6 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VPS50Q96JG6 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms