Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 AC007322.1-201ENST00000426983 750 ntBASIC19.47■□□□□ 0.71
VMP1Q96GC9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 AC013268.1-206ENST00000638368 961 ntBASIC19.47■□□□□ 0.71
VMP1Q96GC9 AC112229.1-201ENST00000639295 961 ntBASIC19.47■□□□□ 0.71
VMP1Q96GC9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VMP1Q96GC9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 FEM1AP4-201ENST00000443167 1987 ntBASIC19.46■□□□□ 0.71
VMP1Q96GC9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.46■□□□□ 0.71
VMP1Q96GC9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VMP1Q96GC9 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 AC006970.2-201ENST00000450065 779 ntBASIC19.45■□□□□ 0.7
VMP1Q96GC9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VMP1Q96GC9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VMP1Q96GC9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 CNN2P6-201ENST00000439038 900 ntBASIC19.44■□□□□ 0.7
VMP1Q96GC9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.44■□□□□ 0.7
VMP1Q96GC9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VMP1Q96GC9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VMP1Q96GC9 RBM17P2-201ENST00000616397 1405 ntBASIC19.43■□□□□ 0.7
VMP1Q96GC9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.43■□□□□ 0.7
VMP1Q96GC9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VMP1Q96GC9 Z98882.1-201ENST00000622160 2253 ntBASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms