Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.95■□□□□ 0.78
LMX1AQ8TE12 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 AL117328.2-201ENST00000624617 1940 ntBASIC19.94■□□□□ 0.78
LMX1AQ8TE12 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LMX1AQ8TE12 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 FBXW4P1-201ENST00000426721 2239 ntBASIC19.93■□□□□ 0.78
LMX1AQ8TE12 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LMX1AQ8TE12 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 AL390719.1-204ENST00000412397 1219 ntBASIC19.92■□□□□ 0.78
LMX1AQ8TE12 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 AC005829.2-201ENST00000571422 1056 ntBASIC19.92■□□□□ 0.78
LMX1AQ8TE12 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LMX1AQ8TE12 AC011484.1-201ENST00000377652 1995 ntBASIC19.92■□□□□ 0.78
LMX1AQ8TE12 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 MIR718-201ENST00000390190 70 ntBASIC19.91■□□□□ 0.78
LMX1AQ8TE12 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LMX1AQ8TE12 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.9■□□□□ 0.78
LMX1AQ8TE12 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 AC120498.8-201ENST00000614275 531 ntBASIC19.9■□□□□ 0.78
LMX1AQ8TE12 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.9■□□□□ 0.78
LMX1AQ8TE12 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms