Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NUDCD3Q8IVD9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 AL136116.3-201ENST00000402907 1138 ntBASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 AC024257.2-201ENST00000549699 147 ntBASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NUDCD3Q8IVD9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 AC008764.7-201ENST00000593779 1081 ntBASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 TSPY26P-201ENST00000476365 1326 ntBASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NUDCD3Q8IVD9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.83
NUDCD3Q8IVD9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NUDCD3Q8IVD9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 AC116562.4-201ENST00000641316 2276 ntBASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 AL136162.1-201ENST00000607711 1078 ntBASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms