Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LYSMD3Q7Z3D4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.51■□□□□ 0.87
LYSMD3Q7Z3D4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LYSMD3Q7Z3D4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 GPX1P1-201ENST00000388829 606 ntBASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 AL355472.2-201ENST00000422958 438 ntBASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 FP700111.2-201ENST00000619190 1892 ntBASIC20.5■□□□□ 0.87
LYSMD3Q7Z3D4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 RNF165-205ENST00000588679 2904 ntBASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 MCRIP2P1-201ENST00000394346 511 ntBASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 AC100791.3-201ENST00000617619 330 ntBASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 AL109923.1-201ENST00000618799 583 ntBASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LYSMD3Q7Z3D4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 MKRN4P-201ENST00000444706 1521 ntBASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 GUSBP6-202ENST00000438529 1198 ntBASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 AC104771.1-201ENST00000603335 964 ntBASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 MIR2861-201ENST00000636310 90 ntBASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 AC007225.1-201ENST00000566331 1836 ntBASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
LYSMD3Q7Z3D4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 AC087633.2-202ENST00000565166 1439 ntBASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
LYSMD3Q7Z3D4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LYSMD3Q7Z3D4 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LYSMD3Q7Z3D4 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LYSMD3Q7Z3D4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms