Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 KRT18P68-201ENST00000392293 1000 ntBASIC17.53■□□□□ 0.4
USF3Q68DE3 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.53■□□□□ 0.4
USF3Q68DE3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.53■□□□□ 0.4
USF3Q68DE3 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.53■□□□□ 0.4
USF3Q68DE3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.53■□□□□ 0.4
USF3Q68DE3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.53■□□□□ 0.4
USF3Q68DE3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.53■□□□□ 0.4
USF3Q68DE3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 FAM21FP-204ENST00000608637 956 ntBASIC17.53■□□□□ 0.4
USF3Q68DE3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.53■□□□□ 0.4
USF3Q68DE3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
USF3Q68DE3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.53■□□□□ 0.4
USF3Q68DE3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
USF3Q68DE3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.53■□□□□ 0.4
USF3Q68DE3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
USF3Q68DE3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.53■□□□□ 0.4
USF3Q68DE3 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
USF3Q68DE3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.53■□□□□ 0.4
USF3Q68DE3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USF3Q68DE3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USF3Q68DE3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.53■□□□□ 0.4
USF3Q68DE3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF3Q68DE3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
USF3Q68DE3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.52■□□□□ 0.4
USF3Q68DE3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF3Q68DE3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.52■□□□□ 0.4
USF3Q68DE3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.52■□□□□ 0.4
USF3Q68DE3 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF3Q68DE3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.52■□□□□ 0.4
USF3Q68DE3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.52■□□□□ 0.4
USF3Q68DE3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
USF3Q68DE3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF3Q68DE3 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF3Q68DE3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF3Q68DE3 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USF3Q68DE3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
USF3Q68DE3 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
USF3Q68DE3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USF3Q68DE3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
USF3Q68DE3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.52■□□□□ 0.39
USF3Q68DE3 C1QBPP2-201ENST00000528754 825 ntBASIC17.52■□□□□ 0.39
USF3Q68DE3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USF3Q68DE3 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.52■□□□□ 0.39
USF3Q68DE3 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
USF3Q68DE3 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
USF3Q68DE3 AC244015.2-201ENST00000616358 1861 ntBASIC17.52■□□□□ 0.39
USF3Q68DE3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.51■□□□□ 0.39
USF3Q68DE3 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.51■□□□□ 0.39
USF3Q68DE3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.51■□□□□ 0.39
USF3Q68DE3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.51■□□□□ 0.39
USF3Q68DE3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USF3Q68DE3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
USF3Q68DE3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF3Q68DE3 AL359736.2-201ENST00000621992 437 ntBASIC17.51■□□□□ 0.39
USF3Q68DE3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.51■□□□□ 0.39
USF3Q68DE3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
USF3Q68DE3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USF3Q68DE3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF3Q68DE3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
USF3Q68DE3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.5■□□□□ 0.39
USF3Q68DE3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USF3Q68DE3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF3Q68DE3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
USF3Q68DE3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.5■□□□□ 0.39
USF3Q68DE3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
USF3Q68DE3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.5■□□□□ 0.39
USF3Q68DE3 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.5■□□□□ 0.39
USF3Q68DE3 RPPH1-201ENST00000516869 333 ntBASIC17.5■□□□□ 0.39
USF3Q68DE3 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.5■□□□□ 0.39
USF3Q68DE3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
USF3Q68DE3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.5■□□□□ 0.39
USF3Q68DE3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF3Q68DE3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
USF3Q68DE3 FEM1AP4-201ENST00000443167 1987 ntBASIC17.5■□□□□ 0.39
USF3Q68DE3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF3Q68DE3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF3Q68DE3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.5■□□□□ 0.39
USF3Q68DE3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF3Q68DE3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF3Q68DE3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms