Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AC007274.1-201ENST00000439805 662 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 ATP5G2P1-201ENST00000433580 426 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 NUS1P1-201ENST00000446295 882 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 KRT16P5-201ENST00000455284 522 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 LHX6-205ENST00000464484 666 ntTSL 2 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AP005242.2-201ENST00000580065 1175 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AC124283.5-201ENST00000624661 1809 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 SLC25A6P4-201ENST00000586535 553 ntBASIC11.31□□□□□ -0.6
UBR4Q5T4S7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 MIR3180-1-201ENST00000580374 94 ntBASIC11.31□□□□□ -0.6
UBR4Q5T4S7 MIR3180-3-201ENST00000584616 94 ntBASIC11.31□□□□□ -0.6
UBR4Q5T4S7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 CD70-202ENST00000423145 881 ntTSL 2 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
UBR4Q5T4S7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 AL031008.1-201ENST00000619963 541 ntBASIC11.3□□□□□ -0.6
UBR4Q5T4S7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 SAPCD2P1-201ENST00000395413 1184 ntBASIC11.3□□□□□ -0.6
UBR4Q5T4S7 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
UBR4Q5T4S7 PRELID1P1-202ENST00000567272 903 ntBASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms