Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MYCNOS-205ENST00000641950 531 ntBASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC40Q4G0X9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 AC007322.3-201ENST00000426526 701 ntBASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC22.41■■□□□ 1.18
CCDC40Q4G0X9 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 AC092720.2-201ENST00000602388 1665 ntBASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 MIR2861-201ENST00000636310 90 ntBASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC40Q4G0X9 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.18
CCDC40Q4G0X9 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC40Q4G0X9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
CCDC40Q4G0X9 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC40Q4G0X9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC40Q4G0X9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC40Q4G0X9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC40Q4G0X9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC40Q4G0X9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC40Q4G0X9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC40Q4G0X9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
CCDC40Q4G0X9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC40Q4G0X9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC40Q4G0X9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC40Q4G0X9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms