Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PCDH1Q08174 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
PCDH1Q08174 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.7■□□□□ 0.74
PCDH1Q08174 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDH1Q08174 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
PCDH1Q08174 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH1Q08174 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 CNN2P6-201ENST00000439038 900 ntBASIC19.69■□□□□ 0.74
PCDH1Q08174 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH1Q08174 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.69■□□□□ 0.74
PCDH1Q08174 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PCDH1Q08174 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
PCDH1Q08174 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
PCDH1Q08174 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
PCDH1Q08174 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH1Q08174 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH1Q08174 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
PCDH1Q08174 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH1Q08174 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDH1Q08174 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.68■□□□□ 0.74
PCDH1Q08174 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PCDH1Q08174 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PCDH1Q08174 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
PCDH1Q08174 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PCDH1Q08174 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDH1Q08174 AC092720.2-201ENST00000602388 1665 ntBASIC19.68■□□□□ 0.74
PCDH1Q08174 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH1Q08174 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
PCDH1Q08174 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.67■□□□□ 0.74
PCDH1Q08174 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
PCDH1Q08174 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.67■□□□□ 0.74
PCDH1Q08174 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 AC100791.3-201ENST00000617619 330 ntBASIC19.67■□□□□ 0.74
PCDH1Q08174 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PCDH1Q08174 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.67■□□□□ 0.74
PCDH1Q08174 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.67■□□□□ 0.74
PCDH1Q08174 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PCDH1Q08174 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH1Q08174 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
PCDH1Q08174 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 AC016769.1-201ENST00000409132 1010 ntBASIC19.66■□□□□ 0.74
PCDH1Q08174 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDH1Q08174 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDH1Q08174 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDH1Q08174 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.66■□□□□ 0.74
PCDH1Q08174 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDH1Q08174 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
PCDH1Q08174 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PCDH1Q08174 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PCDH1Q08174 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH1Q08174 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDH1Q08174 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.65■□□□□ 0.74
PCDH1Q08174 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PCDH1Q08174 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms