Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 RPS28BYLR264W 204 nt3.56□□□□□ -1.84
UBP3Q01477 ABF2YMR072W 552 nt3.56□□□□□ -1.84
UBP3Q01477 YGL063C-AYGL063C-A 150 nt3.55□□□□□ -1.84
UBP3Q01477 RPL26AYLR344W 384 nt3.55□□□□□ -1.84
UBP3Q01477 MET5YJR137C 4329 nt3.55□□□□□ -1.84
UBP3Q01477 AI2Q0055 2565 nt3.55□□□□□ -1.84
UBP3Q01477 RLF2YPR018W 1821 nt3.54□□□□□ -1.84 RIP-Chip
UBP3Q01477 HTL1YCR020W-B 237 nt3.54□□□□□ -1.84
UBP3Q01477 YDL211CYDL211C 1119 nt3.54□□□□□ -1.84
UBP3Q01477 YEL020C-BYEL020C-B 198 nt3.54□□□□□ -1.84
UBP3Q01477 RPL8BYLL045C 771 nt3.54□□□□□ -1.84
UBP3Q01477 YTA7YGR270W 4140 nt3.54□□□□□ -1.84
UBP3Q01477 TSC11YER093C 4293 nt3.54□□□□□ -1.84
UBP3Q01477 SPB1YCL054W 2526 nt3.53□□□□□ -1.84
UBP3Q01477 AKR1YDR264C 2295 nt3.53□□□□□ -1.84
UBP3Q01477 YDL007C-AYDL007C-A 258 nt3.53□□□□□ -1.84
UBP3Q01477 TIM11YDR322C-A 291 nt3.53□□□□□ -1.84
UBP3Q01477 YGR151CYGR151C 336 nt3.53□□□□□ -1.84
UBP3Q01477 tT(UGU)Q1tT(UGU)Q1 76 nt3.53□□□□□ -1.84
UBP3Q01477 YAL064W-BYAL064W-B 381 nt3.53□□□□□ -1.84
UBP3Q01477 DAD3YBR233W-A 285 nt3.53□□□□□ -1.84
UBP3Q01477 PCF11YDR228C 1881 nt3.52□□□□□ -1.85
UBP3Q01477 MAK21YDR060W 3078 nt3.52□□□□□ -1.85 RIP-Chip
UBP3Q01477 FAP7YDL166C 594 nt3.52□□□□□ -1.85
UBP3Q01477 YRB1YDR002W 606 nt3.52□□□□□ -1.85
UBP3Q01477 RPS17BYDR447C 411 nt3.52□□□□□ -1.85
UBP3Q01477 USE1YGL098W 738 nt3.52□□□□□ -1.85
UBP3Q01477 SDH2YLL041C 801 nt3.52□□□□□ -1.85
UBP3Q01477 YMR122W-AYMR122W-A 255 nt3.52□□□□□ -1.85
UBP3Q01477 YOR050CYOR050C 348 nt3.52□□□□□ -1.85
UBP3Q01477 snR42snR42 351 nt3.52□□□□□ -1.85
UBP3Q01477 snR49snR49 165 nt3.52□□□□□ -1.85
UBP3Q01477 VTC4YJL012C 2166 nt3.52□□□□□ -1.85
UBP3Q01477 TRM2YKR056W 1920 nt3.52□□□□□ -1.85
UBP3Q01477 CCT7YJL111W 1653 nt3.52□□□□□ -1.85
UBP3Q01477 COX1Q0045 1605 nt3.52□□□□□ -1.85
UBP3Q01477 NPR3YHL023C 3441 nt3.51□□□□□ -1.85
UBP3Q01477 STU2YLR045C 2667 nt3.51□□□□□ -1.85
UBP3Q01477 RGR1YLR071C 3249 nt3.51□□□□□ -1.85
UBP3Q01477 DOA4YDR069C 2781 nt3.51□□□□□ -1.85
UBP3Q01477 RPL35AYDL191W 363 nt3.51□□□□□ -1.85 RIP-Chip
UBP3Q01477 YGL041CYGL041C 204 nt3.51□□□□□ -1.85
UBP3Q01477 TMA22YJR014W 597 nt3.51□□□□□ -1.85
UBP3Q01477 YAL059C-AYAL059C-A 423 nt3.51□□□□□ -1.85
UBP3Q01477 SOK1YDR006C 2706 nt3.51□□□□□ -1.85
UBP3Q01477 REC8YPR007C 2043 nt3.51□□□□□ -1.85
UBP3Q01477 YDL011CYDL011C 324 nt3.5□□□□□ -1.85
UBP3Q01477 YFH1YDL120W 525 nt3.5□□□□□ -1.85 RIP-Chip
UBP3Q01477 TIM8YJR135W-A 264 nt3.5□□□□□ -1.85
UBP3Q01477 TCP1YDR212W 1680 nt3.49□□□□□ -1.85
UBP3Q01477 DLS1YJL065C 504 nt3.49□□□□□ -1.85
UBP3Q01477 GIS2YNL255C 462 nt3.49□□□□□ -1.85
UBP3Q01477 YOR170WYOR170W 306 nt3.49□□□□□ -1.85
UBP3Q01477 TAO3YIL129C 7131 nt3.49□□□□□ -1.85
UBP3Q01477 YDL062WYDL062W 426 nt3.48□□□□□ -1.85
UBP3Q01477 PSF1YDR013W 627 nt3.48□□□□□ -1.85
UBP3Q01477 ADK1YDR226W 669 nt3.48□□□□□ -1.85
UBP3Q01477 DAD4YDR320C-A 219 nt3.48□□□□□ -1.85
UBP3Q01477 tK(UUU)DtK(UUU)D 73 nt3.48□□□□□ -1.85
UBP3Q01477 tK(UUU)G1tK(UUU)G1 73 nt3.48□□□□□ -1.85
UBP3Q01477 tK(UUU)G2tK(UUU)G2 73 nt3.48□□□□□ -1.85
UBP3Q01477 YER189WYER189W 369 nt3.48□□□□□ -1.85
UBP3Q01477 tK(UUU)KtK(UUU)K 73 nt3.48□□□□□ -1.85
UBP3Q01477 tK(UUU)LtK(UUU)L 73 nt3.48□□□□□ -1.85
UBP3Q01477 tK(UUU)OtK(UUU)O 73 nt3.48□□□□□ -1.85
UBP3Q01477 tK(UUU)PtK(UUU)P 73 nt3.48□□□□□ -1.85
UBP3Q01477 RPL14BYHL001W 417 nt3.48□□□□□ -1.85
UBP3Q01477 ROM1YGR070W 3468 nt3.48□□□□□ -1.85 RIP-Chip
UBP3Q01477 SGO1YOR073W 1773 nt3.48□□□□□ -1.85
UBP3Q01477 PRK1YIL095W 2433 nt3.47□□□□□ -1.85
UBP3Q01477 MZM1YDR493W 372 nt3.47□□□□□ -1.85
UBP3Q01477 PAU10YDR542W 363 nt3.47□□□□□ -1.85
UBP3Q01477 PAU11YGL261C 363 nt3.47□□□□□ -1.85
UBP3Q01477 RPA34YJL148W 702 nt3.47□□□□□ -1.85
UBP3Q01477 RPS21AYKR057W 264 nt3.47□□□□□ -1.85
UBP3Q01477 PAU4YLR461W 363 nt3.47□□□□□ -1.85
UBP3Q01477 PSY2YNL201C 2577 nt3.47□□□□□ -1.85
UBP3Q01477 YIL166CYIL166C 1629 nt3.46□□□□□ -1.86
UBP3Q01477 CSN9YDR179C 489 nt3.46□□□□□ -1.86
UBP3Q01477 YOL155W-AYOL155W-A 135 nt3.46□□□□□ -1.86
UBP3Q01477 YOR011W-AYOR011W-A 207 nt3.46□□□□□ -1.86
UBP3Q01477 HCS1YKL017C 2052 nt3.46□□□□□ -1.86
UBP3Q01477 MIT1YEL007W 2001 nt3.46□□□□□ -1.86 RIP-Chip
UBP3Q01477 TPS2YDR074W 2691 nt3.46□□□□□ -1.86
UBP3Q01477 RPN1YHR027C 2982 nt3.45□□□□□ -1.86 RIP-Chip
UBP3Q01477 RRP5YMR229C 5190 nt3.45□□□□□ -1.86 RIP-Chip
UBP3Q01477 AUS1YOR011W 4185 nt3.45□□□□□ -1.86
UBP3Q01477 YNL034WYNL034W 1839 nt3.45□□□□□ -1.86
UBP3Q01477 NCE101YJL205C 162 nt3.45□□□□□ -1.86
UBP3Q01477 GPI14YJR013W 1212 nt3.45□□□□□ -1.86
UBP3Q01477 ESF2YNR054C 951 nt3.45□□□□□ -1.86
UBP3Q01477 YOR072W-AYOR072W-A 249 nt3.45□□□□□ -1.86
UBP3Q01477 IES4YOR189W 351 nt3.45□□□□□ -1.86
UBP3Q01477 BNA4YBL098W 1383 nt3.45□□□□□ -1.86
UBP3Q01477 YEL025CYEL025C 3567 nt3.45□□□□□ -1.86
UBP3Q01477 YDR250CYDR250C 276 nt3.44□□□□□ -1.86
UBP3Q01477 RPL20AYMR242C 519 nt3.44□□□□□ -1.86
UBP3Q01477 YBL065WYBL065W 345 nt3.44□□□□□ -1.86
UBP3Q01477 YOL019W-AYOL019W-A 153 nt3.44□□□□□ -1.86
UBP3Q01477 NTO1YPR031W 2247 nt3.44□□□□□ -1.86 RIP-Chip
Retrieved 100 of 7,029 protein–RNA pairs in 71.2 ms