Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
RPS28P62857 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC11.95□□□□□ -0.5
RPS28P62857 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC11.95□□□□□ -0.5
RPS28P62857 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPS28P62857 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
RPS28P62857 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
RPS28P62857 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC11.95□□□□□ -0.5
RPS28P62857 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC11.95□□□□□ -0.5
RPS28P62857 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
RPS28P62857 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC11.94□□□□□ -0.5
RPS28P62857 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC11.94□□□□□ -0.5
RPS28P62857 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC11.94□□□□□ -0.5
RPS28P62857 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 MIR6089-201ENST00000616698 64 ntBASIC11.94□□□□□ -0.5
RPS28P62857 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
RPS28P62857 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC11.94□□□□□ -0.5
RPS28P62857 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC11.94□□□□□ -0.5
RPS28P62857 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC11.94□□□□□ -0.5
RPS28P62857 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
RPS28P62857 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC11.94□□□□□ -0.5
RPS28P62857 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPS28P62857 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 USP39-204ENST00000409766 2033 ntTSL 2 BASIC11.93□□□□□ -0.5
RPS28P62857 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 AC127502.1-201ENST00000399971 1502 ntBASIC11.93□□□□□ -0.5
RPS28P62857 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC11.93□□□□□ -0.5
RPS28P62857 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC11.93□□□□□ -0.5
RPS28P62857 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC11.93□□□□□ -0.5
RPS28P62857 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
RPS28P62857 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPS28P62857 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
RPS28P62857 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC11.93□□□□□ -0.5
RPS28P62857 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC11.92□□□□□ -0.5
RPS28P62857 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC11.92□□□□□ -0.5
RPS28P62857 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
RPS28P62857 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 AC020907.5-201ENST00000624372 1936 ntBASIC11.92□□□□□ -0.5
RPS28P62857 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
RPS28P62857 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC11.92□□□□□ -0.5
RPS28P62857 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 142.1 ms