Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.48■□□□□ 0.87
CXCL12P48061 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL12P48061 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL12P48061 KRT16P5-201ENST00000455284 522 ntBASIC20.48■□□□□ 0.87
CXCL12P48061 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.48■□□□□ 0.87
CXCL12P48061 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.48■□□□□ 0.87
CXCL12P48061 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.48■□□□□ 0.87
CXCL12P48061 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL12P48061 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.48■□□□□ 0.87
CXCL12P48061 AL121829.2-201ENST00000620908 328 ntBASIC20.48■□□□□ 0.87
CXCL12P48061 AC092865.7-201ENST00000641832 219 ntBASIC20.48■□□□□ 0.87
CXCL12P48061 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL12P48061 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.48■□□□□ 0.87
CXCL12P48061 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL12P48061 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL12P48061 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL12P48061 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.47■□□□□ 0.87
CXCL12P48061 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CXCL12P48061 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
CXCL12P48061 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.47■□□□□ 0.87
CXCL12P48061 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.47■□□□□ 0.87
CXCL12P48061 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.47■□□□□ 0.87
CXCL12P48061 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.47■□□□□ 0.87
CXCL12P48061 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CXCL12P48061 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.47■□□□□ 0.87
CXCL12P48061 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL12P48061 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL12P48061 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL12P48061 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL12P48061 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL12P48061 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL12P48061 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.46■□□□□ 0.87
CXCL12P48061 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL12P48061 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL12P48061 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.46■□□□□ 0.87
CXCL12P48061 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.46■□□□□ 0.87
CXCL12P48061 AC005363.2-201ENST00000618631 242 ntBASIC20.46■□□□□ 0.87
CXCL12P48061 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.46■□□□□ 0.87
CXCL12P48061 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.46■□□□□ 0.87
CXCL12P48061 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.46■□□□□ 0.87
CXCL12P48061 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.46■□□□□ 0.87
CXCL12P48061 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.46■□□□□ 0.87
CXCL12P48061 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL12P48061 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
CXCL12P48061 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CXCL12P48061 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CXCL12P48061 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CXCL12P48061 FAM197Y1-201ENST00000421178 764 ntBASIC20.45■□□□□ 0.86
CXCL12P48061 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CXCL12P48061 AC145285.6-201ENST00000604632 637 ntBASIC20.45■□□□□ 0.86
CXCL12P48061 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.45■□□□□ 0.86
CXCL12P48061 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.45■□□□□ 0.86
CXCL12P48061 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.45■□□□□ 0.86
CXCL12P48061 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CXCL12P48061 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CXCL12P48061 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.44■□□□□ 0.86
CXCL12P48061 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.44■□□□□ 0.86
CXCL12P48061 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.44■□□□□ 0.86
CXCL12P48061 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.44■□□□□ 0.86
CXCL12P48061 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CXCL12P48061 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.44■□□□□ 0.86
CXCL12P48061 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.44■□□□□ 0.86
CXCL12P48061 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.44■□□□□ 0.86
CXCL12P48061 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.44■□□□□ 0.86
CXCL12P48061 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CXCL12P48061 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CXCL12P48061 MIR6786-201ENST00000616843 113 ntBASIC20.44■□□□□ 0.86
CXCL12P48061 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.44■□□□□ 0.86
CXCL12P48061 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.44■□□□□ 0.86
CXCL12P48061 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.44■□□□□ 0.86
CXCL12P48061 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CXCL12P48061 NBPF21P-201ENST00000425093 1451 ntBASIC20.43■□□□□ 0.86
CXCL12P48061 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.43■□□□□ 0.86
CXCL12P48061 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.43■□□□□ 0.86
CXCL12P48061 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.43■□□□□ 0.86
CXCL12P48061 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CXCL12P48061 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.43■□□□□ 0.86
CXCL12P48061 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.43■□□□□ 0.86
CXCL12P48061 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CXCL12P48061 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL12P48061 AC073195.1-201ENST00000607241 877 ntBASIC20.43■□□□□ 0.86
CXCL12P48061 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL12P48061 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL12P48061 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.43■□□□□ 0.86
CXCL12P48061 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.43■□□□□ 0.86
CXCL12P48061 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL12P48061 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CXCL12P48061 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms