Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHRNA4P43681 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA4P43681 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA4P43681 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.61■□□□□ 0.89
CHRNA4P43681 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA4P43681 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CHRNA4P43681 AL162412.1-201ENST00000567129 965 ntBASIC20.61■□□□□ 0.89
CHRNA4P43681 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.61■□□□□ 0.89
CHRNA4P43681 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.61■□□□□ 0.89
CHRNA4P43681 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
CHRNA4P43681 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA4P43681 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA4P43681 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.61■□□□□ 0.89
CHRNA4P43681 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA4P43681 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.61■□□□□ 0.89
CHRNA4P43681 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.61■□□□□ 0.89
CHRNA4P43681 AC020907.5-201ENST00000624372 1936 ntBASIC20.61■□□□□ 0.89
CHRNA4P43681 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA4P43681 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.6■□□□□ 0.89
CHRNA4P43681 GABARAPL3-202ENST00000624044 1851 ntBASIC20.6■□□□□ 0.89
CHRNA4P43681 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.6■□□□□ 0.89
CHRNA4P43681 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CHRNA4P43681 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.6■□□□□ 0.89
CHRNA4P43681 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.6■□□□□ 0.89
CHRNA4P43681 RARRES2P4-201ENST00000514074 484 ntBASIC20.6■□□□□ 0.89
CHRNA4P43681 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.6■□□□□ 0.89
CHRNA4P43681 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 AC092666.2-201ENST00000613287 246 ntBASIC20.6■□□□□ 0.89
CHRNA4P43681 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
CHRNA4P43681 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CHRNA4P43681 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
CHRNA4P43681 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.6■□□□□ 0.89
CHRNA4P43681 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
CHRNA4P43681 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA4P43681 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.59■□□□□ 0.89
CHRNA4P43681 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.59■□□□□ 0.89
CHRNA4P43681 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.59■□□□□ 0.89
CHRNA4P43681 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHRNA4P43681 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHRNA4P43681 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.59■□□□□ 0.89
CHRNA4P43681 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHRNA4P43681 CYP21A1P-202ENST00000354927 1481 ntBASIC20.59■□□□□ 0.89
CHRNA4P43681 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHRNA4P43681 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CHRNA4P43681 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHRNA4P43681 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHRNA4P43681 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHRNA4P43681 RAP2CP1-201ENST00000605103 478 ntBASIC20.59■□□□□ 0.89
CHRNA4P43681 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.59■□□□□ 0.89
CHRNA4P43681 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.59■□□□□ 0.89
CHRNA4P43681 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CHRNA4P43681 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHRNA4P43681 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.58■□□□□ 0.89
CHRNA4P43681 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHRNA4P43681 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CHRNA4P43681 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHRNA4P43681 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHRNA4P43681 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHRNA4P43681 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.58■□□□□ 0.89
CHRNA4P43681 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.58■□□□□ 0.89
CHRNA4P43681 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHRNA4P43681 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHRNA4P43681 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.58■□□□□ 0.89
CHRNA4P43681 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.58■□□□□ 0.89
CHRNA4P43681 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.58■□□□□ 0.89
CHRNA4P43681 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.58■□□□□ 0.89
CHRNA4P43681 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.58■□□□□ 0.89
CHRNA4P43681 AC005181.1-201ENST00000604782 1256 ntBASIC20.58■□□□□ 0.89
CHRNA4P43681 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CHRNA4P43681 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHRNA4P43681 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CHRNA4P43681 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.57■□□□□ 0.88
CHRNA4P43681 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CHRNA4P43681 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.57■□□□□ 0.88
CHRNA4P43681 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CHRNA4P43681 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.57■□□□□ 0.88
CHRNA4P43681 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.57■□□□□ 0.88
CHRNA4P43681 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.57■□□□□ 0.88
CHRNA4P43681 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.57■□□□□ 0.88
CHRNA4P43681 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.57■□□□□ 0.88
CHRNA4P43681 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.57■□□□□ 0.88
CHRNA4P43681 AL050303.2-201ENST00000619798 666 ntBASIC20.57■□□□□ 0.88
CHRNA4P43681 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.57■□□□□ 0.88
CHRNA4P43681 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHRNA4P43681 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms