Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MFF-203ENST00000349901 1716 ntTSL 2 BASIC27.27■■□□□ 1.96
COL18A1P39060 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL18A1P39060 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC27.27■■□□□ 1.96
COL18A1P39060 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL18A1P39060 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL18A1P39060 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC27.27■■□□□ 1.96
COL18A1P39060 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC27.27■■□□□ 1.96
COL18A1P39060 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC27.27■■□□□ 1.96
COL18A1P39060 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC27.27■■□□□ 1.96
COL18A1P39060 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC27.27■■□□□ 1.96
COL18A1P39060 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC27.27■■□□□ 1.96
COL18A1P39060 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL18A1P39060 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC27.26■■□□□ 1.96
COL18A1P39060 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
COL18A1P39060 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC27.26■■□□□ 1.95
COL18A1P39060 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC27.26■■□□□ 1.95
COL18A1P39060 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC27.26■■□□□ 1.95
COL18A1P39060 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL18A1P39060 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL18A1P39060 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL18A1P39060 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL18A1P39060 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC27.25■■□□□ 1.95
COL18A1P39060 AC026471.5-201ENST00000615068 467 ntBASIC27.25■■□□□ 1.95
COL18A1P39060 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
COL18A1P39060 C9orf163-202ENST00000624034 2573 ntBASIC27.25■■□□□ 1.95
COL18A1P39060 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL18A1P39060 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
COL18A1P39060 NUDT16P1-203ENST00000513809 620 ntBASIC27.25■■□□□ 1.95
COL18A1P39060 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC27.25■■□□□ 1.95
COL18A1P39060 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
COL18A1P39060 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC27.25■■□□□ 1.95
COL18A1P39060 AL121829.2-201ENST00000620908 328 ntBASIC27.25■■□□□ 1.95
COL18A1P39060 KRT8P9-201ENST00000558927 1449 ntBASIC27.24■■□□□ 1.95
COL18A1P39060 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
COL18A1P39060 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL18A1P39060 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
COL18A1P39060 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC27.24■■□□□ 1.95
COL18A1P39060 AP003071.4-201ENST00000562276 1284 ntBASIC27.24■■□□□ 1.95
COL18A1P39060 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL18A1P39060 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL18A1P39060 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC27.23■■□□□ 1.95
COL18A1P39060 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL18A1P39060 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC27.23■■□□□ 1.95
COL18A1P39060 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL18A1P39060 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL18A1P39060 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC27.23■■□□□ 1.95
COL18A1P39060 CD177P1-201ENST00000606252 935 ntBASIC27.23■■□□□ 1.95
COL18A1P39060 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC27.23■■□□□ 1.95
COL18A1P39060 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL18A1P39060 TREX2-204ENST00000370212 861 ntTSL 5 BASIC27.22■■□□□ 1.95
COL18A1P39060 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
COL18A1P39060 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
COL18A1P39060 AL390719.1-204ENST00000412397 1219 ntBASIC27.22■■□□□ 1.95
COL18A1P39060 AF186192.3-201ENST00000583427 947 ntBASIC27.22■■□□□ 1.95
COL18A1P39060 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC27.22■■□□□ 1.95
COL18A1P39060 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL18A1P39060 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC27.22■■□□□ 1.95
COL18A1P39060 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL18A1P39060 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL18A1P39060 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL18A1P39060 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC27.22■■□□□ 1.95
COL18A1P39060 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC27.22■■□□□ 1.95
COL18A1P39060 AC124283.5-201ENST00000624661 1809 ntBASIC27.21■■□□□ 1.95
COL18A1P39060 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC27.21■■□□□ 1.95
COL18A1P39060 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
COL18A1P39060 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
COL18A1P39060 KRT16P5-201ENST00000455284 522 ntBASIC27.21■■□□□ 1.95
COL18A1P39060 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC27.21■■□□□ 1.95
COL18A1P39060 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC27.21■■□□□ 1.95
COL18A1P39060 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC27.21■■□□□ 1.95
COL18A1P39060 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
COL18A1P39060 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL18A1P39060 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL18A1P39060 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
COL18A1P39060 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
COL18A1P39060 CBFB-203ENST00000561924 584 ntTSL 5 BASIC27.2■■□□□ 1.95
COL18A1P39060 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
COL18A1P39060 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
COL18A1P39060 ME2-206ENST00000638410 2289 ntTSL 5 BASIC27.2■■□□□ 1.95
COL18A1P39060 ME2-210ENST00000639255 2262 ntTSL 5 BASIC27.2■■□□□ 1.95
COL18A1P39060 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
COL18A1P39060 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
COL18A1P39060 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
COL18A1P39060 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC27.2■■□□□ 1.94
COL18A1P39060 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
COL18A1P39060 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
COL18A1P39060 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC27.2■■□□□ 1.94
COL18A1P39060 P4HB-223ENST00000576390 439 ntTSL 4 BASIC27.2■■□□□ 1.94
COL18A1P39060 GOLGA2P6-201ENST00000340929 2049 ntBASIC27.19■■□□□ 1.94
COL18A1P39060 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC27.19■■□□□ 1.94
COL18A1P39060 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC27.19■■□□□ 1.94
COL18A1P39060 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
COL18A1P39060 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
COL18A1P39060 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC27.19■■□□□ 1.94
COL18A1P39060 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC27.19■■□□□ 1.94
COL18A1P39060 ME2-208ENST00000638937 2471 ntTSL 5 BASIC27.19■■□□□ 1.94
COL18A1P39060 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
COL18A1P39060 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
COL18A1P39060 SAPCD2P4-201ENST00000424595 1171 ntBASIC27.19■■□□□ 1.94
COL18A1P39060 MIR6786-201ENST00000616843 113 ntBASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms