Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TMX2-CTNND1H3BSU7 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC128676.1-201ENST00000454392 318 ntBASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC142381.4-202ENST00000563973 229 ntBASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20■□□□□ 0.79
TMX2-CTNND1H3BSU7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 RPS2P52-201ENST00000469610 820 ntBASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.99■□□□□ 0.79
TMX2-CTNND1H3BSU7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC003102.1-202ENST00000563394 1796 ntBASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC091799.1-201ENST00000422823 811 ntBASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 AP003097.1-201ENST00000530657 1135 ntBASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 AL589743.5-201ENST00000616611 1050 ntBASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
TMX2-CTNND1H3BSU7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 AC098590.1-201ENST00000468126 897 ntBASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 CYP2T3P-201ENST00000601990 817 ntBASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TMX2-CTNND1H3BSU7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.96■□□□□ 0.79
TMX2-CTNND1H3BSU7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TMX2-CTNND1H3BSU7 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TMX2-CTNND1H3BSU7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TMX2-CTNND1H3BSU7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TMX2-CTNND1H3BSU7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms