Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nkain2-201ENSMUST00000092602 558 ntBASIC29.9■■■□□ 2.38
Scn11aQ9R053 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
Scn11aQ9R053 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Scn11aQ9R053 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Scn11aQ9R053 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC29.86■■■□□ 2.37
Scn11aQ9R053 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
Scn11aQ9R053 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
Scn11aQ9R053 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Scn11aQ9R053 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Scn11aQ9R053 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC29.84■■■□□ 2.37
Scn11aQ9R053 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC29.83■■■□□ 2.37
Scn11aQ9R053 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC29.83■■■□□ 2.37
Scn11aQ9R053 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
Scn11aQ9R053 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
Scn11aQ9R053 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC29.82■■■□□ 2.36
Scn11aQ9R053 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Scn11aQ9R053 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Scn11aQ9R053 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
Scn11aQ9R053 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC29.81■■■□□ 2.36
Scn11aQ9R053 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Scn11aQ9R053 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
Scn11aQ9R053 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Scn11aQ9R053 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
Scn11aQ9R053 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Scn11aQ9R053 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
Scn11aQ9R053 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
Scn11aQ9R053 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Scn11aQ9R053 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC29.78■■■□□ 2.36
Scn11aQ9R053 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
Scn11aQ9R053 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
Scn11aQ9R053 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
Scn11aQ9R053 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
Scn11aQ9R053 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
Scn11aQ9R053 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC29.75■■■□□ 2.35
Scn11aQ9R053 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC29.75■■■□□ 2.35
Scn11aQ9R053 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC29.74■■■□□ 2.35
Scn11aQ9R053 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
Scn11aQ9R053 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Scn11aQ9R053 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
Scn11aQ9R053 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC29.71■■■□□ 2.35
Scn11aQ9R053 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
Scn11aQ9R053 Mir6538-201ENSMUST00000183713 110 ntBASIC29.69■■■□□ 2.34
Scn11aQ9R053 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
Scn11aQ9R053 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Scn11aQ9R053 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC29.68■■■□□ 2.34
Scn11aQ9R053 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Scn11aQ9R053 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC29.67■■■□□ 2.34
Scn11aQ9R053 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Scn11aQ9R053 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
Scn11aQ9R053 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
Scn11aQ9R053 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC29.66■■■□□ 2.34
Scn11aQ9R053 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC29.65■■■□□ 2.34
Scn11aQ9R053 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC29.65■■■□□ 2.34
Scn11aQ9R053 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC29.64■■■□□ 2.34
Scn11aQ9R053 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Scn11aQ9R053 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
Scn11aQ9R053 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC29.62■■■□□ 2.33
Scn11aQ9R053 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
Scn11aQ9R053 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Scn11aQ9R053 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
Scn11aQ9R053 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC29.59■■■□□ 2.33
Scn11aQ9R053 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
Scn11aQ9R053 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
Scn11aQ9R053 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
Scn11aQ9R053 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
Scn11aQ9R053 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
Scn11aQ9R053 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Scn11aQ9R053 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC29.57■■■□□ 2.32
Scn11aQ9R053 Gm11175-201ENSMUST00000116172 543 ntBASIC29.56■■■□□ 2.32
Scn11aQ9R053 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC29.56■■■□□ 2.32
Scn11aQ9R053 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Scn11aQ9R053 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
Scn11aQ9R053 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC29.54■■■□□ 2.32
Scn11aQ9R053 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
Scn11aQ9R053 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC29.53■■■□□ 2.32
Scn11aQ9R053 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Scn11aQ9R053 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Scn11aQ9R053 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
Scn11aQ9R053 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Scn11aQ9R053 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
Scn11aQ9R053 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
Scn11aQ9R053 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Scn11aQ9R053 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC29.5■■■□□ 2.31
Scn11aQ9R053 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC29.49■■■□□ 2.31
Scn11aQ9R053 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
Scn11aQ9R053 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
Scn11aQ9R053 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Scn11aQ9R053 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
Scn11aQ9R053 Gm7432-201ENSMUST00000210343 879 ntBASIC29.47■■■□□ 2.31
Scn11aQ9R053 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
Scn11aQ9R053 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC29.45■■■□□ 2.31
Scn11aQ9R053 Gm30023-201ENSMUST00000197970 889 ntBASIC29.45■■■□□ 2.31
Scn11aQ9R053 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
Scn11aQ9R053 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC29.45■■■□□ 2.3
Scn11aQ9R053 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.3
Scn11aQ9R053 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC29.44■■■□□ 2.3
Scn11aQ9R053 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC29.44■■■□□ 2.3
Scn11aQ9R053 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Scn11aQ9R053 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
Scn11aQ9R053 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms