Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
Usp40Q8BWR4 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
Usp40Q8BWR4 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
Usp40Q8BWR4 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
Usp40Q8BWR4 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC34.28■■■■□ 3.08
Usp40Q8BWR4 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
Usp40Q8BWR4 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC34.27■■■■□ 3.08
Usp40Q8BWR4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Usp40Q8BWR4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC34.22■■■■□ 3.07
Usp40Q8BWR4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
Usp40Q8BWR4 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
Usp40Q8BWR4 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC34.2■■■■□ 3.07
Usp40Q8BWR4 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
Usp40Q8BWR4 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC34.2■■■■□ 3.07
Usp40Q8BWR4 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
Usp40Q8BWR4 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
Usp40Q8BWR4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC34.18■■■■□ 3.06
Usp40Q8BWR4 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC34.17■■■■□ 3.06
Usp40Q8BWR4 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC34.17■■■■□ 3.06
Usp40Q8BWR4 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC34.13■■■■□ 3.05
Usp40Q8BWR4 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
Usp40Q8BWR4 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
Usp40Q8BWR4 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC34.12■■■■□ 3.05
Usp40Q8BWR4 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC34.12■■■■□ 3.05
Usp40Q8BWR4 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC34.11■■■■□ 3.05
Usp40Q8BWR4 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC34.11■■■■□ 3.05
Usp40Q8BWR4 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
Usp40Q8BWR4 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC34.1■■■■□ 3.05
Usp40Q8BWR4 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC34.09■■■■□ 3.05
Usp40Q8BWR4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
Usp40Q8BWR4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
Usp40Q8BWR4 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
Usp40Q8BWR4 Gm7432-201ENSMUST00000210343 879 ntBASIC34.08■■■■□ 3.05
Usp40Q8BWR4 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.05
Usp40Q8BWR4 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC34.07■■■■□ 3.04
Usp40Q8BWR4 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
Usp40Q8BWR4 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC34.06■■■■□ 3.04
Usp40Q8BWR4 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC34.05■■■■□ 3.04
Usp40Q8BWR4 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC34.05■■■■□ 3.04
Usp40Q8BWR4 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC34.05■■■■□ 3.04
Usp40Q8BWR4 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC34.04■■■■□ 3.04
Usp40Q8BWR4 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC34.02■■■■□ 3.04
Usp40Q8BWR4 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC34.02■■■■□ 3.04
Usp40Q8BWR4 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC34.01■■■■□ 3.03
Usp40Q8BWR4 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC34■■■■□ 3.03
Usp40Q8BWR4 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC34■■■■□ 3.03
Usp40Q8BWR4 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
Usp40Q8BWR4 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
Usp40Q8BWR4 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC33.97■■■■□ 3.03
Usp40Q8BWR4 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC33.96■■■■□ 3.03
Usp40Q8BWR4 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC33.96■■■■□ 3.03
Usp40Q8BWR4 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
Usp40Q8BWR4 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC33.96■■■■□ 3.03
Usp40Q8BWR4 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC33.95■■■■□ 3.03
Usp40Q8BWR4 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC33.95■■■■□ 3.02
Usp40Q8BWR4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC33.94■■■■□ 3.02
Usp40Q8BWR4 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC33.93■■■■□ 3.02
Usp40Q8BWR4 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC33.93■■■■□ 3.02
Usp40Q8BWR4 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC33.93■■■■□ 3.02
Usp40Q8BWR4 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
Usp40Q8BWR4 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
Usp40Q8BWR4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC33.91■■■■□ 3.02
Usp40Q8BWR4 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
Usp40Q8BWR4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC33.89■■■■□ 3.02
Usp40Q8BWR4 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC33.88■■■■□ 3.01
Usp40Q8BWR4 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
Usp40Q8BWR4 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC33.88■■■■□ 3.01
Usp40Q8BWR4 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
Usp40Q8BWR4 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Usp40Q8BWR4 Gm11599-201ENSMUST00000118720 878 ntBASIC33.87■■■■□ 3.01
Usp40Q8BWR4 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
Usp40Q8BWR4 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC33.86■■■■□ 3.01
Usp40Q8BWR4 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
Usp40Q8BWR4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
Usp40Q8BWR4 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC33.84■■■■□ 3.01
Usp40Q8BWR4 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
Usp40Q8BWR4 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC33.83■■■■□ 3.01
Usp40Q8BWR4 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC33.83■■■■□ 3.01
Usp40Q8BWR4 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC33.83■■■■□ 3.01
Usp40Q8BWR4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC33.83■■■■□ 3.01
Usp40Q8BWR4 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC33.81■■■■□ 3
Usp40Q8BWR4 Gm30023-201ENSMUST00000197970 889 ntBASIC33.8■■■■□ 3
Usp40Q8BWR4 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC33.8■■■■□ 3
Usp40Q8BWR4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC33.79■■■■□ 3
Usp40Q8BWR4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC33.79■■■■□ 3
Usp40Q8BWR4 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC33.79■■■■□ 3
Usp40Q8BWR4 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC33.78■■■■□ 3
Usp40Q8BWR4 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
Usp40Q8BWR4 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC33.78■■■■□ 3
Usp40Q8BWR4 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC33.78■■■■□ 3
Usp40Q8BWR4 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC33.77■■■■□ 3
Usp40Q8BWR4 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Usp40Q8BWR4 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Usp40Q8BWR4 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC33.75■■■□□ 2.99
Usp40Q8BWR4 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Usp40Q8BWR4 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC33.75■■■□□ 2.99
Usp40Q8BWR4 AC153504.1-201ENSMUST00000218379 2290 ntBASIC33.73■■■□□ 2.99
Usp40Q8BWR4 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC33.73■■■□□ 2.99
Usp40Q8BWR4 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC33.73■■■□□ 2.99
Usp40Q8BWR4 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC33.73■■■□□ 2.99
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms