Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 AL356652.1-201ENST00000615962 565 ntBASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 PLK5-205ENST00000642079 1969 ntBASIC23.51■■□□□ 1.35
PCDHA1Q9Y5I3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA1Q9Y5I3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA1Q9Y5I3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 AC005229.4-201ENST00000610085 2198 ntBASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
PCDHA1Q9Y5I3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 C2orf69P4-201ENST00000565394 541 ntBASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA1Q9Y5I3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 MFF-205ENST00000354503 1085 ntTSL 2 BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 MIR2861-201ENST00000636310 90 ntBASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA1Q9Y5I3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHA1Q9Y5I3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHA1Q9Y5I3 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHA1Q9Y5I3 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHA1Q9Y5I3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.45■■□□□ 1.34
PCDHA1Q9Y5I3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC23.45■■□□□ 1.34
PCDHA1Q9Y5I3 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms