Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK1Q9Y566 AC007375.3-201ENST00000600936 2314 ntBASIC18.57■□□□□ 0.56
SHANK1Q9Y566 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK1Q9Y566 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 AL023875.1-201ENST00000640777 796 ntBASIC18.56■□□□□ 0.56
SHANK1Q9Y566 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHANK1Q9Y566 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 AC113410.3-201ENST00000623366 203 ntBASIC18.55■□□□□ 0.56
SHANK1Q9Y566 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHANK1Q9Y566 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 AL135905.2-201ENST00000584934 1404 ntBASIC18.54■□□□□ 0.56
SHANK1Q9Y566 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 AC127496.7-201ENST00000625110 1798 ntBASIC18.54■□□□□ 0.56
SHANK1Q9Y566 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms