Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC39.12■■■■□ 3.85
SHROOM4Q9ULL8 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC39.12■■■■□ 3.85
SHROOM4Q9ULL8 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC39.12■■■■□ 3.85
SHROOM4Q9ULL8 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 SAPCD2P1-201ENST00000395413 1184 ntBASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 AC239809.2-201ENST00000415381 517 ntBASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 REXO2-208ENST00000539754 791 ntTSL 2 BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 NT5C-211ENST00000582170 653 ntTSL 3 BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC39.11■■■■□ 3.85
SHROOM4Q9ULL8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC39.1■■■■□ 3.85
SHROOM4Q9ULL8 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC39.1■■■■□ 3.85
SHROOM4Q9ULL8 CDV3P1-201ENST00000471403 739 ntBASIC39.1■■■■□ 3.85
SHROOM4Q9ULL8 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC39.09■■■■□ 3.85
SHROOM4Q9ULL8 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC39.09■■■■□ 3.85
SHROOM4Q9ULL8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC39.09■■■■□ 3.85
SHROOM4Q9ULL8 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC39.09■■■■□ 3.85
SHROOM4Q9ULL8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC39.09■■■■□ 3.85
SHROOM4Q9ULL8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC39.09■■■■□ 3.85
SHROOM4Q9ULL8 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC39.09■■■■□ 3.85
SHROOM4Q9ULL8 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC39.09■■■■□ 3.85
SHROOM4Q9ULL8 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC39.08■■■■□ 3.85
SHROOM4Q9ULL8 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC39.07■■■■□ 3.85
SHROOM4Q9ULL8 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC39.07■■■■□ 3.85
SHROOM4Q9ULL8 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC39.07■■■■□ 3.85
SHROOM4Q9ULL8 AC105020.6-201ENST00000621523 1217 ntBASIC39.07■■■■□ 3.85
SHROOM4Q9ULL8 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC39.07■■■■□ 3.85
SHROOM4Q9ULL8 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC39.07■■■■□ 3.85
SHROOM4Q9ULL8 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 PENK-204ENST00000518770 863 ntTSL 2 BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 AC092865.7-201ENST00000641832 219 ntBASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 GCK-205ENST00000437084 1385 ntTSL 5 BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC39.06■■■■□ 3.84
SHROOM4Q9ULL8 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 MFF-205ENST00000354503 1085 ntTSL 2 BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC39.05■■■■□ 3.84
SHROOM4Q9ULL8 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 HES2-205ENST00000487437 968 ntTSL 3 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 TPM1-226ENST00000560959 925 ntTSL 2 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 AC133561.1-201ENST00000568600 2415 ntBASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC39.04■■■■□ 3.84
SHROOM4Q9ULL8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 MFF-203ENST00000349901 1716 ntTSL 2 BASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 ECEL1P1-201ENST00000373592 1742 ntBASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 AC007322.3-201ENST00000426526 701 ntBASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC39.03■■■■□ 3.84
SHROOM4Q9ULL8 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC39.02■■■■□ 3.84
SHROOM4Q9ULL8 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms