Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
DKK3Q9UBP4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
DKK3Q9UBP4 AC121338.2-201ENST00000622535 1744 ntBASIC20.58■□□□□ 0.88
DKK3Q9UBP4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
DKK3Q9UBP4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.58■□□□□ 0.88
DKK3Q9UBP4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DKK3Q9UBP4 AC027702.1-201ENST00000563810 1770 ntBASIC20.57■□□□□ 0.88
DKK3Q9UBP4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 AC026310.3-201ENST00000625186 2373 ntBASIC20.56■□□□□ 0.88
DKK3Q9UBP4 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DKK3Q9UBP4 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 AL356652.1-201ENST00000615962 565 ntBASIC20.55■□□□□ 0.88
DKK3Q9UBP4 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.55■□□□□ 0.88
DKK3Q9UBP4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DKK3Q9UBP4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
DKK3Q9UBP4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
DKK3Q9UBP4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
DKK3Q9UBP4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
DKK3Q9UBP4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
DKK3Q9UBP4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
DKK3Q9UBP4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.52■□□□□ 0.88
DKK3Q9UBP4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms