Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 LINC02228-203ENST00000641970 1355 ntBASIC18.46■□□□□ 0.55
HINT3Q9NQE9 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HINT3Q9NQE9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
HINT3Q9NQE9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.45■□□□□ 0.54
HINT3Q9NQE9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 AC092720.2-201ENST00000602388 1665 ntBASIC18.44■□□□□ 0.54
HINT3Q9NQE9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.44■□□□□ 0.54
HINT3Q9NQE9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 AC034268.1-201ENST00000441047 882 ntBASIC18.43■□□□□ 0.54
HINT3Q9NQE9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 TPRG1LP1-201ENST00000598702 760 ntBASIC18.43■□□□□ 0.54
HINT3Q9NQE9 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.43■□□□□ 0.54
HINT3Q9NQE9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.43■□□□□ 0.54
HINT3Q9NQE9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HINT3Q9NQE9 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
HINT3Q9NQE9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HINT3Q9NQE9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
HINT3Q9NQE9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HINT3Q9NQE9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HINT3Q9NQE9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HINT3Q9NQE9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.41■□□□□ 0.54
HINT3Q9NQE9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HINT3Q9NQE9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms