Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
SIX2Q9NPC8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SIX2Q9NPC8 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.03■■□□□ 1.12
SIX2Q9NPC8 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.03■■□□□ 1.12
SIX2Q9NPC8 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SIX2Q9NPC8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SIX2Q9NPC8 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 SPI1-203ENST00000533030 661 ntTSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
SIX2Q9NPC8 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 KRT8P36-201ENST00000489121 1440 ntBASIC22.01■■□□□ 1.11
SIX2Q9NPC8 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 MFSD11-216ENST00000590393 1141 ntBASIC22.01■■□□□ 1.11
SIX2Q9NPC8 WWOX-218ENST00000627394 894 ntTSL 5 BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SIX2Q9NPC8 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC22■■□□□ 1.11
SIX2Q9NPC8 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22■■□□□ 1.11
SIX2Q9NPC8 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
SIX2Q9NPC8 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22■■□□□ 1.11
SIX2Q9NPC8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
SIX2Q9NPC8 AC112907.3-201ENST00000577781 2400 ntBASIC22■■□□□ 1.11
SIX2Q9NPC8 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22■■□□□ 1.11
SIX2Q9NPC8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
SIX2Q9NPC8 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC22■■□□□ 1.11
SIX2Q9NPC8 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SIX2Q9NPC8 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 AC137761.2-201ENST00000561729 223 ntBASIC21.99■■□□□ 1.11
SIX2Q9NPC8 AC145350.3-201ENST00000569033 163 ntBASIC21.99■■□□□ 1.11
SIX2Q9NPC8 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SIX2Q9NPC8 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 CDV3P1-201ENST00000471403 739 ntBASIC21.98■■□□□ 1.11
SIX2Q9NPC8 AC016405.3-201ENST00000607710 860 ntBASIC21.98■■□□□ 1.11
SIX2Q9NPC8 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SIX2Q9NPC8 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 AC006015.1-201ENST00000429970 570 ntBASIC21.97■■□□□ 1.11
SIX2Q9NPC8 AC007322.4-201ENST00000509611 723 ntBASIC21.97■■□□□ 1.11
SIX2Q9NPC8 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms