Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 KRT18P68-201ENST00000392293 1000 ntBASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 AC073210.2-201ENST00000430369 194 ntBASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM39Q9HCM9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.27■□□□□ 0.83
TRIM39Q9HCM9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 AC092118.2-201ENST00000613495 667 ntBASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 AC133041.1-202ENST00000642053 222 ntBASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM39Q9HCM9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 LSM12P1-201ENST00000411836 588 ntBASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM39Q9HCM9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 AC027702.1-201ENST00000563810 1770 ntBASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 AC069152.1-201ENST00000438030 544 ntBASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 AC005229.4-201ENST00000610085 2198 ntBASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM39Q9HCM9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 KRT17P1-201ENST00000399211 1546 ntBASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 PLK5-205ENST00000642079 1969 ntBASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms