Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 AC010141.2-201ENST00000452426 721 ntBASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 TERF1P2-201ENST00000583350 1212 ntBASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 KRT18P61-201ENST00000585825 1298 ntBASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 MIR5787-201ENST00000611784 55 ntBASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM56Q9BRZ2 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 CCDC92B-201ENST00000575506 885 ntBASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 AC008175.2-201ENST00000612840 297 ntBASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM56Q9BRZ2 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 POU5F1P4-201ENST00000413175 1085 ntBASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM56Q9BRZ2 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 AC004854.2-201ENST00000608450 1441 ntBASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 YBX1P1-201ENST00000445822 960 ntBASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM56Q9BRZ2 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms