Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TIMP4Q99727 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.77■□□□□ 0.6
TIMP4Q99727 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 AC016405.3-201ENST00000607710 860 ntBASIC18.77■□□□□ 0.6
TIMP4Q99727 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.59
TIMP4Q99727 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TIMP4Q99727 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.77■□□□□ 0.59
TIMP4Q99727 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TIMP4Q99727 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TIMP4Q99727 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TIMP4Q99727 MKRN4P-201ENST00000444706 1521 ntBASIC18.76■□□□□ 0.59
TIMP4Q99727 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
TIMP4Q99727 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.76■□□□□ 0.59
TIMP4Q99727 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TIMP4Q99727 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.76■□□□□ 0.59
TIMP4Q99727 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.76■□□□□ 0.59
TIMP4Q99727 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TIMP4Q99727 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.76■□□□□ 0.59
TIMP4Q99727 AC245052.3-201ENST00000450182 901 ntBASIC18.76■□□□□ 0.59
TIMP4Q99727 AC093787.1-201ENST00000450396 207 ntBASIC18.76■□□□□ 0.59
TIMP4Q99727 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.76■□□□□ 0.59
TIMP4Q99727 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.76■□□□□ 0.59
TIMP4Q99727 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
TIMP4Q99727 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.76■□□□□ 0.59
TIMP4Q99727 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TIMP4Q99727 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.76■□□□□ 0.59
TIMP4Q99727 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.76■□□□□ 0.59
TIMP4Q99727 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TIMP4Q99727 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TIMP4Q99727 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.76■□□□□ 0.59
TIMP4Q99727 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
TIMP4Q99727 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TIMP4Q99727 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.75■□□□□ 0.59
TIMP4Q99727 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.75■□□□□ 0.59
TIMP4Q99727 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TIMP4Q99727 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.75■□□□□ 0.59
TIMP4Q99727 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.75■□□□□ 0.59
TIMP4Q99727 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.75■□□□□ 0.59
TIMP4Q99727 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
TIMP4Q99727 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 AP005212.1-201ENST00000581547 1997 ntBASIC18.74■□□□□ 0.59
TIMP4Q99727 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TIMP4Q99727 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.74■□□□□ 0.59
TIMP4Q99727 MIPEPP3-201ENST00000412105 444 ntBASIC18.74■□□□□ 0.59
TIMP4Q99727 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TIMP4Q99727 AC091799.1-201ENST00000422823 811 ntBASIC18.74■□□□□ 0.59
TIMP4Q99727 AC069152.1-201ENST00000438030 544 ntBASIC18.74■□□□□ 0.59
TIMP4Q99727 RARRES2P4-201ENST00000514074 484 ntBASIC18.74■□□□□ 0.59
TIMP4Q99727 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.74■□□□□ 0.59
TIMP4Q99727 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.74■□□□□ 0.59
TIMP4Q99727 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.74■□□□□ 0.59
TIMP4Q99727 AC133041.1-202ENST00000642053 222 ntBASIC18.74■□□□□ 0.59
TIMP4Q99727 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TIMP4Q99727 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TIMP4Q99727 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TIMP4Q99727 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TIMP4Q99727 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TIMP4Q99727 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.73■□□□□ 0.59
TIMP4Q99727 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TIMP4Q99727 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.73■□□□□ 0.59
TIMP4Q99727 AC073210.2-201ENST00000430369 194 ntBASIC18.73■□□□□ 0.59
TIMP4Q99727 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TIMP4Q99727 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.73■□□□□ 0.59
TIMP4Q99727 MIR4758-201ENST00000577688 71 ntBASIC18.73■□□□□ 0.59
TIMP4Q99727 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.73■□□□□ 0.59
TIMP4Q99727 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
TIMP4Q99727 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TIMP4Q99727 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.73■□□□□ 0.59
TIMP4Q99727 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TIMP4Q99727 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
TIMP4Q99727 AC073314.1-201ENST00000568729 2216 ntBASIC18.73■□□□□ 0.59
TIMP4Q99727 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TIMP4Q99727 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
TIMP4Q99727 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms