Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
CDX2Q99626 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CDX2Q99626 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDX2Q99626 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CDX2Q99626 BX664615.1-201ENST00000443558 458 ntBASIC21.7■■□□□ 1.06
CDX2Q99626 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.7■■□□□ 1.06
CDX2Q99626 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.7■■□□□ 1.06
CDX2Q99626 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.7■■□□□ 1.06
CDX2Q99626 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.7■■□□□ 1.06
CDX2Q99626 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.7■■□□□ 1.06
CDX2Q99626 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDX2Q99626 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.7■■□□□ 1.06
CDX2Q99626 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDX2Q99626 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDX2Q99626 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDX2Q99626 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDX2Q99626 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.69■■□□□ 1.06
CDX2Q99626 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.69■■□□□ 1.06
CDX2Q99626 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.69■■□□□ 1.06
CDX2Q99626 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.69■■□□□ 1.06
CDX2Q99626 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDX2Q99626 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.69■■□□□ 1.06
CDX2Q99626 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.69■■□□□ 1.06
CDX2Q99626 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDX2Q99626 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDX2Q99626 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CDX2Q99626 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CDX2Q99626 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CDX2Q99626 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CDX2Q99626 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.68■■□□□ 1.06
CDX2Q99626 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.68■■□□□ 1.06
CDX2Q99626 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.68■■□□□ 1.06
CDX2Q99626 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.68■■□□□ 1.06
CDX2Q99626 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CDX2Q99626 C11orf96-202ENST00000528572 1834 ntBASIC21.68■■□□□ 1.06
CDX2Q99626 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDX2Q99626 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CDX2Q99626 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDX2Q99626 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDX2Q99626 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDX2Q99626 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CDX2Q99626 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.67■■□□□ 1.06
CDX2Q99626 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDX2Q99626 ECEL1P2-202ENST00000465689 757 ntBASIC21.67■■□□□ 1.06
CDX2Q99626 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.67■■□□□ 1.06
CDX2Q99626 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.67■■□□□ 1.06
CDX2Q99626 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CDX2Q99626 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.67■■□□□ 1.06
CDX2Q99626 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDX2Q99626 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.66■■□□□ 1.06
CDX2Q99626 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CDX2Q99626 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CDX2Q99626 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CDX2Q99626 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDX2Q99626 FAM8A6P-201ENST00000407496 1135 ntBASIC21.66■■□□□ 1.06
CDX2Q99626 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.66■■□□□ 1.06
CDX2Q99626 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.66■■□□□ 1.06
CDX2Q99626 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.66■■□□□ 1.06
CDX2Q99626 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.65■■□□□ 1.06
CDX2Q99626 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CDX2Q99626 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CDX2Q99626 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CDX2Q99626 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.65■■□□□ 1.06
CDX2Q99626 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CDX2Q99626 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.65■■□□□ 1.06
CDX2Q99626 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CDX2Q99626 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDX2Q99626 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.65■■□□□ 1.06
CDX2Q99626 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.65■■□□□ 1.06
CDX2Q99626 CR392000.1-201ENST00000624770 1228 ntBASIC21.65■■□□□ 1.06
CDX2Q99626 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDX2Q99626 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CDX2Q99626 AC137767.1-201ENST00000602918 1920 ntBASIC21.65■■□□□ 1.06
CDX2Q99626 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.64■■□□□ 1.05
CDX2Q99626 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CDX2Q99626 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.64■■□□□ 1.05
CDX2Q99626 AC093458.2-201ENST00000623150 629 ntBASIC21.64■■□□□ 1.05
CDX2Q99626 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.64■■□□□ 1.05
CDX2Q99626 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.64■■□□□ 1.05
CDX2Q99626 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDX2Q99626 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDX2Q99626 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.63■■□□□ 1.05
CDX2Q99626 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms