Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC34.41■■■■□ 3.1
IFT140Q96RY7 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC34.4■■■■□ 3.1
IFT140Q96RY7 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC34.4■■■■□ 3.1
IFT140Q96RY7 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC34.4■■■■□ 3.1
IFT140Q96RY7 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC34.4■■■■□ 3.1
IFT140Q96RY7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC34.4■■■■□ 3.1
IFT140Q96RY7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
IFT140Q96RY7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
IFT140Q96RY7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
IFT140Q96RY7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
IFT140Q96RY7 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC34.39■■■■□ 3.1
IFT140Q96RY7 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC34.39■■■■□ 3.1
IFT140Q96RY7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
IFT140Q96RY7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
IFT140Q96RY7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC34.39■■■■□ 3.1
IFT140Q96RY7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC34.39■■■■□ 3.1
IFT140Q96RY7 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
IFT140Q96RY7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC34.39■■■■□ 3.1
IFT140Q96RY7 AL356652.1-201ENST00000615962 565 ntBASIC34.39■■■■□ 3.1
IFT140Q96RY7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC34.39■■■■□ 3.1
IFT140Q96RY7 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
IFT140Q96RY7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC34.38■■■■□ 3.09
IFT140Q96RY7 NBPF21P-201ENST00000425093 1451 ntBASIC34.38■■■■□ 3.09
IFT140Q96RY7 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
IFT140Q96RY7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC34.37■■■■□ 3.09
IFT140Q96RY7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
IFT140Q96RY7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC34.37■■■■□ 3.09
IFT140Q96RY7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC34.37■■■■□ 3.09
IFT140Q96RY7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
IFT140Q96RY7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC34.37■■■■□ 3.09
IFT140Q96RY7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC34.37■■■■□ 3.09
IFT140Q96RY7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC34.37■■■■□ 3.09
IFT140Q96RY7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC34.37■■■■□ 3.09
IFT140Q96RY7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC34.36■■■■□ 3.09
IFT140Q96RY7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
IFT140Q96RY7 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC34.36■■■■□ 3.09
IFT140Q96RY7 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC34.36■■■■□ 3.09
IFT140Q96RY7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC34.36■■■■□ 3.09
IFT140Q96RY7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC34.36■■■■□ 3.09
IFT140Q96RY7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC34.36■■■■□ 3.09
IFT140Q96RY7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC34.36■■■■□ 3.09
IFT140Q96RY7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC34.36■■■■□ 3.09
IFT140Q96RY7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC34.36■■■■□ 3.09
IFT140Q96RY7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
IFT140Q96RY7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
IFT140Q96RY7 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
IFT140Q96RY7 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
IFT140Q96RY7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC34.35■■■■□ 3.09
IFT140Q96RY7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC34.35■■■■□ 3.09
IFT140Q96RY7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC34.35■■■■□ 3.09
IFT140Q96RY7 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
IFT140Q96RY7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC34.35■■■■□ 3.09
IFT140Q96RY7 AC116562.2-201ENST00000507042 360 ntBASIC34.35■■■■□ 3.09
IFT140Q96RY7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
IFT140Q96RY7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
IFT140Q96RY7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC34.35■■■■□ 3.09
IFT140Q96RY7 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
IFT140Q96RY7 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC34.34■■■■□ 3.09
IFT140Q96RY7 AC010203.1-204ENST00000548782 407 ntBASIC34.34■■■■□ 3.09
IFT140Q96RY7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC34.34■■■■□ 3.09
IFT140Q96RY7 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC34.34■■■■□ 3.09
IFT140Q96RY7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC34.34■■■■□ 3.09
IFT140Q96RY7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
IFT140Q96RY7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC34.34■■■■□ 3.09
IFT140Q96RY7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC34.34■■■■□ 3.09
IFT140Q96RY7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
IFT140Q96RY7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
IFT140Q96RY7 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC34.33■■■■□ 3.09
IFT140Q96RY7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC34.33■■■■□ 3.09
IFT140Q96RY7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC34.33■■■■□ 3.09
IFT140Q96RY7 AL121894.2-201ENST00000602977 491 ntBASIC34.33■■■■□ 3.09
IFT140Q96RY7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC34.33■■■■□ 3.09
IFT140Q96RY7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC34.33■■■■□ 3.09
IFT140Q96RY7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
IFT140Q96RY7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
IFT140Q96RY7 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
IFT140Q96RY7 AC092053.2-201ENST00000640557 1818 ntBASIC34.33■■■■□ 3.09
IFT140Q96RY7 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
IFT140Q96RY7 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
IFT140Q96RY7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC34.33■■■■□ 3.09
IFT140Q96RY7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
IFT140Q96RY7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.09
IFT140Q96RY7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC34.32■■■■□ 3.09
IFT140Q96RY7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC34.32■■■■□ 3.09
IFT140Q96RY7 AC026471.6-201ENST00000622954 1905 ntBASIC34.32■■■■□ 3.09
IFT140Q96RY7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
IFT140Q96RY7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC34.32■■■■□ 3.08
IFT140Q96RY7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC34.32■■■■□ 3.08
IFT140Q96RY7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
IFT140Q96RY7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC34.32■■■■□ 3.08
IFT140Q96RY7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms