Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VMP1Q96GC9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
VMP1Q96GC9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VMP1Q96GC9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.52■□□□□ 0.71
VMP1Q96GC9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.71
VMP1Q96GC9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VMP1Q96GC9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
VMP1Q96GC9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VMP1Q96GC9 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.51■□□□□ 0.71
VMP1Q96GC9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.51■□□□□ 0.71
VMP1Q96GC9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 DUX4L16-201ENST00000555130 1264 ntBASIC19.51■□□□□ 0.71
VMP1Q96GC9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.51■□□□□ 0.71
VMP1Q96GC9 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.51■□□□□ 0.71
VMP1Q96GC9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.51■□□□□ 0.71
VMP1Q96GC9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.51■□□□□ 0.71
VMP1Q96GC9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VMP1Q96GC9 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VMP1Q96GC9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
VMP1Q96GC9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.5■□□□□ 0.71
VMP1Q96GC9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.5■□□□□ 0.71
VMP1Q96GC9 RAP2CP1-201ENST00000605103 478 ntBASIC19.5■□□□□ 0.71
VMP1Q96GC9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.5■□□□□ 0.71
VMP1Q96GC9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 LINC01006-201ENST00000333319 2292 ntBASIC19.5■□□□□ 0.71
VMP1Q96GC9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.5■□□□□ 0.71
VMP1Q96GC9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
VMP1Q96GC9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VMP1Q96GC9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VMP1Q96GC9 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
VMP1Q96GC9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.48■□□□□ 0.71
VMP1Q96GC9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
VMP1Q96GC9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 TERF1P5-201ENST00000477545 1207 ntBASIC19.48■□□□□ 0.71
VMP1Q96GC9 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.48■□□□□ 0.71
VMP1Q96GC9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.48■□□□□ 0.71
VMP1Q96GC9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
VMP1Q96GC9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.48■□□□□ 0.71
VMP1Q96GC9 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.48■□□□□ 0.71
VMP1Q96GC9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VMP1Q96GC9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VMP1Q96GC9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms