Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC233723.2-201ENST00000623798 2106 ntBASIC20.93■□□□□ 0.94
CHFRQ96EP1 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.93■□□□□ 0.94
CHFRQ96EP1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.92■□□□□ 0.94
CHFRQ96EP1 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CHFRQ96EP1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHFRQ96EP1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.92■□□□□ 0.94
CHFRQ96EP1 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.92■□□□□ 0.94
CHFRQ96EP1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CHFRQ96EP1 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.92■□□□□ 0.94
CHFRQ96EP1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHFRQ96EP1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHFRQ96EP1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CHFRQ96EP1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHFRQ96EP1 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.91■□□□□ 0.94
CHFRQ96EP1 AC124016.1-201ENST00000609552 612 ntBASIC20.91■□□□□ 0.94
CHFRQ96EP1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHFRQ96EP1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 AC005829.2-201ENST00000571422 1056 ntBASIC20.9■□□□□ 0.94
CHFRQ96EP1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 AC120498.8-201ENST00000614275 531 ntBASIC20.9■□□□□ 0.94
CHFRQ96EP1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 AC006557.6-201ENST00000623071 864 ntBASIC20.9■□□□□ 0.94
CHFRQ96EP1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHFRQ96EP1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CHFRQ96EP1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.89■□□□□ 0.94
CHFRQ96EP1 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.89■□□□□ 0.94
CHFRQ96EP1 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CHFRQ96EP1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
CHFRQ96EP1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHFRQ96EP1 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.89■□□□□ 0.93
CHFRQ96EP1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.89■□□□□ 0.93
CHFRQ96EP1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.89■□□□□ 0.93
CHFRQ96EP1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
CHFRQ96EP1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.89■□□□□ 0.93
CHFRQ96EP1 AL023875.1-201ENST00000640777 796 ntBASIC20.89■□□□□ 0.93
CHFRQ96EP1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHFRQ96EP1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHFRQ96EP1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHFRQ96EP1 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
CHFRQ96EP1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CHFRQ96EP1 AC133681.1-201ENST00000465482 601 ntBASIC20.88■□□□□ 0.93
CHFRQ96EP1 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CHFRQ96EP1 AC233702.5-201ENST00000584107 538 ntBASIC20.88■□□□□ 0.93
CHFRQ96EP1 AL356652.1-201ENST00000615962 565 ntBASIC20.88■□□□□ 0.93
CHFRQ96EP1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.88■□□□□ 0.93
CHFRQ96EP1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHFRQ96EP1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms