Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 COPE-203ENST00000351079 907 ntTSL 2 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMC1BQ8NDV3 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.51
SMC1BQ8NDV3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.51
SMC1BQ8NDV3 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 AK4P3-201ENST00000418260 669 ntBASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 AC142381.3-201ENST00000568208 1670 ntBASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 MED25-212ENST00000618715 1467 ntTSL 5 BASIC24.45■■□□□ 1.5
SMC1BQ8NDV3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 AC063952.2-201ENST00000498792 1227 ntBASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
SMC1BQ8NDV3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 HES2-206ENST00000489730 730 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 NBPF21P-201ENST00000425093 1451 ntBASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
SMC1BQ8NDV3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 AP002982.1-201ENST00000492365 877 ntBASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 AL121829.2-201ENST00000620908 328 ntBASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 AP000550.4-202ENST00000639755 178 ntBASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC1BQ8NDV3 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 MOK-233ENST00000524214 1539 ntTSL 2 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms