Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 ECEL1P3-201ENST00000427961 737 ntBASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 AC124016.1-201ENST00000609552 612 ntBASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 AC120498.8-201ENST00000614275 531 ntBASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.94
USHBP1Q8N6Y0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC27.14■■□□□ 1.93
USHBP1Q8N6Y0 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
USHBP1Q8N6Y0 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
USHBP1Q8N6Y0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.93
USHBP1Q8N6Y0 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 GXYLT1P3-201ENST00000453058 1193 ntBASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 AC005829.2-201ENST00000571422 1056 ntBASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USHBP1Q8N6Y0 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 TSPY7P-201ENST00000431358 1114 ntBASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USHBP1Q8N6Y0 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 ECEL1P1-201ENST00000373592 1742 ntBASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
USHBP1Q8N6Y0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 BRWD1-AS2-201ENST00000603064 1028 ntBASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC27.1■■□□□ 1.93
USHBP1Q8N6Y0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC27.09■■□□□ 1.93
USHBP1Q8N6Y0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 STK25-205ENST00000405883 1904 ntTSL 2 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 AC239809.2-201ENST00000415381 517 ntBASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 AC073912.3-201ENST00000624414 853 ntBASIC27.08■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms