Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VRK3Q8IV63 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
VRK3Q8IV63 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
VRK3Q8IV63 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VRK3Q8IV63 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VRK3Q8IV63 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VRK3Q8IV63 OR10C1-204ENST00000622521 1039 ntBASIC20.04■□□□□ 0.8
VRK3Q8IV63 AC008694.1-202ENST00000636953 945 ntBASIC20.04■□□□□ 0.8
VRK3Q8IV63 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
VRK3Q8IV63 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.04■□□□□ 0.8
VRK3Q8IV63 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VRK3Q8IV63 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VRK3Q8IV63 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
VRK3Q8IV63 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VRK3Q8IV63 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VRK3Q8IV63 AC073314.1-201ENST00000568729 2216 ntBASIC20.03■□□□□ 0.8
VRK3Q8IV63 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VRK3Q8IV63 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 FEM1AP1-201ENST00000431297 1995 ntBASIC20.03■□□□□ 0.8
VRK3Q8IV63 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
VRK3Q8IV63 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 AL355472.2-201ENST00000422958 438 ntBASIC20.03■□□□□ 0.8
VRK3Q8IV63 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 AC006970.2-201ENST00000450065 779 ntBASIC20.03■□□□□ 0.8
VRK3Q8IV63 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 AC133552.2-202ENST00000575694 574 ntBASIC20.03■□□□□ 0.8
VRK3Q8IV63 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VRK3Q8IV63 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VRK3Q8IV63 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
VRK3Q8IV63 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.02■□□□□ 0.8
VRK3Q8IV63 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.02■□□□□ 0.8
VRK3Q8IV63 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.02■□□□□ 0.8
VRK3Q8IV63 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
VRK3Q8IV63 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.02■□□□□ 0.8
VRK3Q8IV63 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.02■□□□□ 0.8
VRK3Q8IV63 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.02■□□□□ 0.8
VRK3Q8IV63 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.02■□□□□ 0.8
VRK3Q8IV63 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.02■□□□□ 0.8
VRK3Q8IV63 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VRK3Q8IV63 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
VRK3Q8IV63 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VRK3Q8IV63 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VRK3Q8IV63 AC010980.2-201ENST00000587099 1412 ntBASIC20.02■□□□□ 0.79
VRK3Q8IV63 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VRK3Q8IV63 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
VRK3Q8IV63 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
VRK3Q8IV63 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VRK3Q8IV63 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VRK3Q8IV63 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
VRK3Q8IV63 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.01■□□□□ 0.79
VRK3Q8IV63 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.01■□□□□ 0.79
VRK3Q8IV63 AC105036.2-201ENST00000569468 176 ntBASIC20.01■□□□□ 0.79
VRK3Q8IV63 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.01■□□□□ 0.79
VRK3Q8IV63 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.01■□□□□ 0.79
VRK3Q8IV63 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VRK3Q8IV63 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.01■□□□□ 0.79
VRK3Q8IV63 AC092667.1-201ENST00000434301 2586 ntBASIC20.01■□□□□ 0.79
VRK3Q8IV63 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VRK3Q8IV63 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VRK3Q8IV63 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VRK3Q8IV63 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20■□□□□ 0.79
VRK3Q8IV63 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20■□□□□ 0.79
VRK3Q8IV63 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20■□□□□ 0.79
VRK3Q8IV63 AF201337.1-201ENST00000520239 748 ntBASIC20■□□□□ 0.79
VRK3Q8IV63 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20■□□□□ 0.79
VRK3Q8IV63 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20■□□□□ 0.79
VRK3Q8IV63 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20■□□□□ 0.79
VRK3Q8IV63 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 GXYLT1P5-201ENST00000614548 1189 ntBASIC20■□□□□ 0.79
VRK3Q8IV63 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20■□□□□ 0.79
VRK3Q8IV63 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20■□□□□ 0.79
VRK3Q8IV63 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20■□□□□ 0.79
VRK3Q8IV63 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20■□□□□ 0.79
VRK3Q8IV63 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VRK3Q8IV63 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms