Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 AC034268.1-201ENST00000441047 882 ntBASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 NTF6G-201ENST00000591094 616 ntBASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 RBM17P2-201ENST00000616397 1405 ntBASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC40Q4G0X9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 SLC7A5P1-201ENST00000568957 537 ntBASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 UBE2DNL-204ENST00000602536 740 ntBASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 AC019069.1-201ENST00000610008 1333 ntBASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC40Q4G0X9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 AC097381.1-201ENST00000429019 1296 ntBASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 AC243732.1-201ENST00000612648 864 ntBASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC40Q4G0X9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC40Q4G0X9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC40Q4G0X9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC40Q4G0X9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 AC091799.1-201ENST00000422823 811 ntBASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC40Q4G0X9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 AC087623.3-201ENST00000607047 1098 ntBASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC40Q4G0X9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC40Q4G0X9 MIR6821-201ENST00000617625 74 ntBASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms