Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 AL355472.2-201ENST00000422958 438 ntBASIC19.66■□□□□ 0.74
COL28A1Q2UY09 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 AC092368.3-202ENST00000574180 1591 ntBASIC19.66■□□□□ 0.74
COL28A1Q2UY09 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 AC007375.3-201ENST00000600936 2314 ntBASIC19.65■□□□□ 0.74
COL28A1Q2UY09 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL28A1Q2UY09 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL28A1Q2UY09 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL28A1Q2UY09 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL28A1Q2UY09 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL28A1Q2UY09 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL28A1Q2UY09 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL28A1Q2UY09 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 POU5F1P4-201ENST00000413175 1085 ntBASIC19.64■□□□□ 0.73
COL28A1Q2UY09 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 AP004607.7-201ENST00000527152 1677 ntBASIC19.64■□□□□ 0.73
COL28A1Q2UY09 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL28A1Q2UY09 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 SOX15-203ENST00000570788 1093 ntBASIC19.63■□□□□ 0.73
COL28A1Q2UY09 AP001412.1-201ENST00000608405 714 ntBASIC19.63■□□□□ 0.73
COL28A1Q2UY09 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
COL28A1Q2UY09 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 RBM17P2-201ENST00000616397 1405 ntBASIC19.62■□□□□ 0.73
COL28A1Q2UY09 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 AL355075.4-201ENST00000554988 638 ntBASIC19.62■□□□□ 0.73
COL28A1Q2UY09 AL034346.1-201ENST00000568244 1277 ntBASIC19.62■□□□□ 0.73
COL28A1Q2UY09 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL28A1Q2UY09 AC008175.2-201ENST00000612840 297 ntBASIC19.62■□□□□ 0.73
COL28A1Q2UY09 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms