Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC14.8□□□□□ -0.04
COL7A1Q02388 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL7A1Q02388 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC14.8□□□□□ -0.04
COL7A1Q02388 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC14.8□□□□□ -0.04
COL7A1Q02388 CDV3P1-201ENST00000471403 739 ntBASIC14.8□□□□□ -0.04
COL7A1Q02388 AL031963.3-201ENST00000606441 850 ntBASIC14.8□□□□□ -0.04
COL7A1Q02388 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL7A1Q02388 LINC01568-207ENST00000641790 1380 ntBASIC14.8□□□□□ -0.04
COL7A1Q02388 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL7A1Q02388 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC14.8□□□□□ -0.04
COL7A1Q02388 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
COL7A1Q02388 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC14.8□□□□□ -0.04
COL7A1Q02388 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC14.79□□□□□ -0.04
COL7A1Q02388 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC14.79□□□□□ -0.04
COL7A1Q02388 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC14.79□□□□□ -0.04
COL7A1Q02388 AP000525.1-201ENST00000608286 694 ntBASIC14.79□□□□□ -0.04
COL7A1Q02388 AC110285.5-201ENST00000611501 352 ntBASIC14.79□□□□□ -0.04
COL7A1Q02388 MYC-208ENST00000641036 567 ntBASIC14.79□□□□□ -0.04
COL7A1Q02388 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC14.79□□□□□ -0.04
COL7A1Q02388 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 AC068473.5-201ENST00000616428 2072 ntBASIC14.79□□□□□ -0.04
COL7A1Q02388 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC14.79□□□□□ -0.04
COL7A1Q02388 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC14.79□□□□□ -0.04
COL7A1Q02388 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC14.79□□□□□ -0.04
COL7A1Q02388 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC14.79□□□□□ -0.04
COL7A1Q02388 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC14.79□□□□□ -0.04
COL7A1Q02388 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 AL390955.1-201ENST00000428694 934 ntBASIC14.79□□□□□ -0.04
COL7A1Q02388 AC009947.2-201ENST00000444014 672 ntBASIC14.79□□□□□ -0.04
COL7A1Q02388 AC104076.2-201ENST00000448912 469 ntBASIC14.79□□□□□ -0.04
COL7A1Q02388 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC14.79□□□□□ -0.04
COL7A1Q02388 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC14.79□□□□□ -0.04
COL7A1Q02388 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
COL7A1Q02388 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL7A1Q02388 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC14.78□□□□□ -0.04
COL7A1Q02388 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC14.78□□□□□ -0.04
COL7A1Q02388 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.78□□□□□ -0.04
COL7A1Q02388 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC14.78□□□□□ -0.04
COL7A1Q02388 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
COL7A1Q02388 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL7A1Q02388 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC14.78□□□□□ -0.04
COL7A1Q02388 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.78□□□□□ -0.04
COL7A1Q02388 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC14.78□□□□□ -0.04
COL7A1Q02388 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL7A1Q02388 GLDC-219ENST00000640208 420 ntTSL 2 BASIC14.78□□□□□ -0.04
COL7A1Q02388 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL7A1Q02388 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL7A1Q02388 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL7A1Q02388 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14.77□□□□□ -0.04
COL7A1Q02388 AL355355.2-201ENST00000442321 338 ntBASIC14.77□□□□□ -0.04
COL7A1Q02388 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC14.77□□□□□ -0.04
COL7A1Q02388 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.04
COL7A1Q02388 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC14.77□□□□□ -0.04
COL7A1Q02388 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
COL7A1Q02388 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC14.77□□□□□ -0.04
COL7A1Q02388 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL7A1Q02388 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC14.77□□□□□ -0.04
COL7A1Q02388 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
COL7A1Q02388 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL7A1Q02388 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC14.77□□□□□ -0.05
COL7A1Q02388 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL7A1Q02388 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC14.77□□□□□ -0.05
COL7A1Q02388 KRT16P5-201ENST00000455284 522 ntBASIC14.77□□□□□ -0.05
COL7A1Q02388 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.77□□□□□ -0.05
COL7A1Q02388 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL7A1Q02388 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL7A1Q02388 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL7A1Q02388 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL7A1Q02388 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL7A1Q02388 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
COL7A1Q02388 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC14.76□□□□□ -0.05
COL7A1Q02388 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC14.76□□□□□ -0.05
COL7A1Q02388 AC005363.2-201ENST00000618631 242 ntBASIC14.76□□□□□ -0.05
COL7A1Q02388 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL7A1Q02388 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms