Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 TEN1YLR010C 483 nt1.76□□□□□ -2.13
RTR1P40084 SMD2YLR275W 333 nt1.76□□□□□ -2.13
RTR1P40084 TYE7YOR344C 876 nt1.76□□□□□ -2.13
RTR1P40084 NAM7YMR080C 2916 nt1.76□□□□□ -2.13
RTR1P40084 PKH3YDR466W 2697 nt1.75□□□□□ -2.13
RTR1P40084 AHC2YCR082W 387 nt1.75□□□□□ -2.13
RTR1P40084 RPS26BYER131W 360 nt1.75□□□□□ -2.13
RTR1P40084 tQ(UUG)E2tQ(UUG)E2 72 nt1.75□□□□□ -2.13
RTR1P40084 EST3YIL009C-A 546 nt1.75□□□□□ -2.13
RTR1P40084 RFA3YJL173C 369 nt1.75□□□□□ -2.13
RTR1P40084 YOL162WYOL162W 648 nt1.75□□□□□ -2.13
RTR1P40084 RRP15YPR143W 753 nt1.75□□□□□ -2.13
RTR1P40084 CUR1YPR158W 759 nt1.75□□□□□ -2.13
RTR1P40084 RXT2YBR095C 1293 nt1.75□□□□□ -2.13
RTR1P40084 snR24snR24 89 nt1.75□□□□□ -2.13
RTR1P40084 MSH6YDR097C 3729 nt1.75□□□□□ -2.13
RTR1P40084 SLM1YIL105C 2061 nt1.75□□□□□ -2.13
RTR1P40084 SNF12YNR023W 1701 nt1.74□□□□□ -2.13
RTR1P40084 IRA1YBR140C 9279 nt1.74□□□□□ -2.13
RTR1P40084 YCR087C-AYCR087C-A 462 nt1.74□□□□□ -2.13
RTR1P40084 tT(UGU)HtT(UGU)H 72 nt1.74□□□□□ -2.13
RTR1P40084 YJL156W-AYJL156W-A 222 nt1.74□□□□□ -2.13
RTR1P40084 COX8YLR395C 237 nt1.74□□□□□ -2.13
RTR1P40084 ARL3YPL051W 597 nt1.74□□□□□ -2.13
RTR1P40084 LHS1YKL073W 2646 nt1.74□□□□□ -2.13
RTR1P40084 YGR130CYGR130C 2451 nt1.74□□□□□ -2.13
RTR1P40084 SEF1YBL066C 3447 nt1.73□□□□□ -2.13
RTR1P40084 YNL034WYNL034W 1839 nt1.73□□□□□ -2.13
RTR1P40084 SLU7YDR088C 1149 nt1.73□□□□□ -2.13
RTR1P40084 YMR158C-AYMR158C-A 138 nt1.73□□□□□ -2.13
RTR1P40084 NSL1YPL233W 651 nt1.73□□□□□ -2.13
RTR1P40084 YDL157CYDL157C 357 nt1.72□□□□□ -2.13
RTR1P40084 YGL165CYGL165C 579 nt1.72□□□□□ -2.13
RTR1P40084 YHL002C-AYHL002C-A 489 nt1.72□□□□□ -2.13
RTR1P40084 YMR173W-AYMR173W-A 1185 nt1.72□□□□□ -2.13
RTR1P40084 SAR1YPL218W 573 nt1.72□□□□□ -2.13
RTR1P40084 YPL238CYPL238C 390 nt1.72□□□□□ -2.13
RTR1P40084 NGG1YDR176W 2109 nt1.72□□□□□ -2.13
RTR1P40084 VPS35YJL154C 2835 nt1.72□□□□□ -2.13
RTR1P40084 YGR109W-AYGR109W-A 873 nt1.71□□□□□ -2.14
RTR1P40084 SRP21YKL122C 504 nt1.71□□□□□ -2.14
RTR1P40084 DIA1YMR316W 1011 nt1.71□□□□□ -2.14
RTR1P40084 MMS22YLR320W 4365 nt1.7□□□□□ -2.14
RTR1P40084 CDC25YLR310C 4770 nt1.7□□□□□ -2.14
RTR1P40084 ATC1YDR184C 885 nt1.7□□□□□ -2.14
RTR1P40084 HOP2YGL033W 657 nt1.7□□□□□ -2.14
RTR1P40084 YGR270C-AYGR270C-A 219 nt1.7□□□□□ -2.14
RTR1P40084 YMR247W-AYMR247W-A 144 nt1.7□□□□□ -2.14
RTR1P40084 YBR051WYBR051W 351 nt1.7□□□□□ -2.14
RTR1P40084 CHC1YGL206C 4962 nt1.7□□□□□ -2.14
RTR1P40084 YJR039WYJR039W 3366 nt1.7□□□□□ -2.14
RTR1P40084 PIK1YNL267W 3201 nt1.7□□□□□ -2.14
RTR1P40084 LST4YKL176C 2487 nt1.69□□□□□ -2.14
RTR1P40084 YDL041WYDL041W 354 nt1.69□□□□□ -2.14
RTR1P40084 COX6YHR051W 447 nt1.69□□□□□ -2.14
RTR1P40084 YMR052C-AYMR052C-A 366 nt1.69□□□□□ -2.14
RTR1P40084 YNR021WYNR021W 1215 nt1.69□□□□□ -2.14
RTR1P40084 NCL1YBL024W 2055 nt1.69□□□□□ -2.14
RTR1P40084 TFC8YPL007C 1767 nt1.69□□□□□ -2.14
RTR1P40084 FIG2YCR089W 4830 nt1.69□□□□□ -2.14
RTR1P40084 SSK2YNR031C 4740 nt1.68□□□□□ -2.14
RTR1P40084 PAU3YCR104W 375 nt1.68□□□□□ -2.14
RTR1P40084 CRD1YDL142C 852 nt1.68□□□□□ -2.14
RTR1P40084 RUB1YDR139C 234 nt1.68□□□□□ -2.14
RTR1P40084 tH(GUG)E1tH(GUG)E1 72 nt1.68□□□□□ -2.14
RTR1P40084 tH(GUG)E2tH(GUG)E2 72 nt1.68□□□□□ -2.14
RTR1P40084 tH(GUG)G1tH(GUG)G1 72 nt1.68□□□□□ -2.14
RTR1P40084 tH(GUG)G2tH(GUG)G2 72 nt1.68□□□□□ -2.14
RTR1P40084 tH(GUG)HtH(GUG)H 72 nt1.68□□□□□ -2.14
RTR1P40084 tH(GUG)KtH(GUG)K 72 nt1.68□□□□□ -2.14
RTR1P40084 tH(GUG)MtH(GUG)M 72 nt1.68□□□□□ -2.14
RTR1P40084 RAM2YKL019W 951 nt1.68□□□□□ -2.14
RTR1P40084 PAI3YMR174C 207 nt1.68□□□□□ -2.14
RTR1P40084 RPB11YOL005C 363 nt1.68□□□□□ -2.14
RTR1P40084 YLR035C-AYLR035C-A 3468 nt1.68□□□□□ -2.14
RTR1P40084 RKM1YPL208W 1752 nt1.67□□□□□ -2.14
RTR1P40084 SVP26YHR181W 687 nt1.67□□□□□ -2.14
RTR1P40084 ALB1YJL122W 528 nt1.67□□□□□ -2.14
RTR1P40084 TPK3YKL166C 1197 nt1.67□□□□□ -2.14
RTR1P40084 IML1YJR138W 4755 nt1.67□□□□□ -2.14
RTR1P40084 STB4YMR019W 2850 nt1.67□□□□□ -2.14
RTR1P40084 SHS1YDL225W 1656 nt1.67□□□□□ -2.14
RTR1P40084 SAC3YDR159W 3906 nt1.67□□□□□ -2.14
RTR1P40084 YLR419WYLR419W 4308 nt1.67□□□□□ -2.14
RTR1P40084 NAN1YPL126W 2691 nt1.66□□□□□ -2.14
RTR1P40084 YDR286CYDR286C 345 nt1.66□□□□□ -2.14
RTR1P40084 THG1YGR024C 714 nt1.66□□□□□ -2.14
RTR1P40084 BTN2YGR142W 1233 nt1.66□□□□□ -2.14
RTR1P40084 YOL150CYOL150C 312 nt1.66□□□□□ -2.14
RTR1P40084 PEX27YOR193W 1131 nt1.66□□□□□ -2.14
RTR1P40084 RPB5YBR154C 648 nt1.66□□□□□ -2.14
RTR1P40084 RPH1YER169W 2391 nt1.66□□□□□ -2.14
RTR1P40084 BPH1YCR032W 6504 nt1.66□□□□□ -2.14
RTR1P40084 RAD18YCR066W 1464 nt1.65□□□□□ -2.15
RTR1P40084 PBP4YDL053C 558 nt1.65□□□□□ -2.15
RTR1P40084 BTT1YDR252W 450 nt1.65□□□□□ -2.15
RTR1P40084 NOP10YHR072W-A 177 nt1.65□□□□□ -2.15
RTR1P40084 SDL1YIL167W 633 nt1.65□□□□□ -2.15
RTR1P40084 PHR1YOR386W 1698 nt1.64□□□□□ -2.15
RTR1P40084 SHE4YOR035C 2370 nt1.64□□□□□ -2.15
Retrieved 100 of 7,029 protein–RNA pairs in 25.1 ms