Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TPM1P09493 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
TPM1P09493 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TPM1P09493 AL136116.3-201ENST00000402907 1138 ntBASIC22.48■■□□□ 1.19
TPM1P09493 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.48■■□□□ 1.19
TPM1P09493 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC22.48■■□□□ 1.19
TPM1P09493 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.48■■□□□ 1.19
TPM1P09493 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TPM1P09493 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.48■■□□□ 1.19
TPM1P09493 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
TPM1P09493 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC22.48■■□□□ 1.19
TPM1P09493 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
TPM1P09493 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TPM1P09493 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.48■■□□□ 1.19
TPM1P09493 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TPM1P09493 AL162377.1-201ENST00000618844 1793 ntBASIC22.48■■□□□ 1.19
TPM1P09493 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.47■■□□□ 1.19
TPM1P09493 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC22.47■■□□□ 1.19
TPM1P09493 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 UNC93B3-201ENST00000308076 687 ntBASIC22.47■■□□□ 1.19
TPM1P09493 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.47■■□□□ 1.19
TPM1P09493 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
TPM1P09493 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.47■■□□□ 1.19
TPM1P09493 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.47■■□□□ 1.19
TPM1P09493 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.47■■□□□ 1.19
TPM1P09493 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
TPM1P09493 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.47■■□□□ 1.19
TPM1P09493 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC22.47■■□□□ 1.19
TPM1P09493 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TPM1P09493 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC22.47■■□□□ 1.19
TPM1P09493 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC22.46■■□□□ 1.19
TPM1P09493 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC22.46■■□□□ 1.19
TPM1P09493 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC22.46■■□□□ 1.19
TPM1P09493 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.46■■□□□ 1.19
TPM1P09493 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
TPM1P09493 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TPM1P09493 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
TPM1P09493 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
TPM1P09493 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.19
TPM1P09493 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TPM1P09493 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
TPM1P09493 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TPM1P09493 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC22.45■■□□□ 1.18
TPM1P09493 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TPM1P09493 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TPM1P09493 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.45■■□□□ 1.18
TPM1P09493 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TPM1P09493 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.45■■□□□ 1.18
TPM1P09493 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC22.45■■□□□ 1.18
TPM1P09493 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
TPM1P09493 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
TPM1P09493 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TPM1P09493 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.45■■□□□ 1.18
TPM1P09493 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC22.44■■□□□ 1.18
TPM1P09493 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 AL020996.1-203ENST00000536896 2307 ntBASIC22.44■■□□□ 1.18
TPM1P09493 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.44■■□□□ 1.18
TPM1P09493 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TPM1P09493 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC22.44■■□□□ 1.18
TPM1P09493 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC22.43■■□□□ 1.18
TPM1P09493 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TPM1P09493 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms