Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC006058.3-201ENST00000606217 1069 ntBASIC20.07■□□□□ 0.8
HOXC4P09017 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
HOXC4P09017 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.07■□□□□ 0.8
HOXC4P09017 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.07■□□□□ 0.8
HOXC4P09017 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
HOXC4P09017 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
HOXC4P09017 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC4P09017 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC4P09017 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC4P09017 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC4P09017 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC4P09017 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC4P09017 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC4P09017 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC4P09017 AC128676.1-201ENST00000454392 318 ntBASIC20.06■□□□□ 0.8
HOXC4P09017 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC4P09017 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.06■□□□□ 0.8
HOXC4P09017 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC4P09017 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC4P09017 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HOXC4P09017 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC4P09017 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC4P09017 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC4P09017 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC4P09017 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
HOXC4P09017 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC4P09017 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
HOXC4P09017 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC4P09017 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
HOXC4P09017 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC4P09017 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC4P09017 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC4P09017 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC4P09017 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC4P09017 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HOXC4P09017 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC4P09017 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXC4P09017 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HOXC4P09017 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.04■□□□□ 0.8
HOXC4P09017 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.04■□□□□ 0.8
HOXC4P09017 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 AC005829.2-201ENST00000571422 1056 ntBASIC20.04■□□□□ 0.8
HOXC4P09017 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HOXC4P09017 AC008687.6-201ENST00000596318 630 ntBASIC20.04■□□□□ 0.8
HOXC4P09017 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC4P09017 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
HOXC4P09017 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HOXC4P09017 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC4P09017 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC4P09017 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC4P09017 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC4P09017 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HOXC4P09017 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.03■□□□□ 0.8
HOXC4P09017 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC4P09017 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC4P09017 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC4P09017 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.02■□□□□ 0.8
HOXC4P09017 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC4P09017 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC4P09017 SOX15-203ENST00000570788 1093 ntBASIC20.02■□□□□ 0.8
HOXC4P09017 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.02■□□□□ 0.8
HOXC4P09017 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.02■□□□□ 0.8
HOXC4P09017 AC073648.6-201ENST00000641589 218 ntBASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms