Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC29.2■■■□□ 2.26
NPHP4O75161 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC29.2■■■□□ 2.26
NPHP4O75161 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC29.2■■■□□ 2.26
NPHP4O75161 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC29.2■■■□□ 2.26
NPHP4O75161 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC29.2■■■□□ 2.26
NPHP4O75161 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC29.2■■■□□ 2.26
NPHP4O75161 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
NPHP4O75161 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC29.2■■■□□ 2.26
NPHP4O75161 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
NPHP4O75161 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.19■■■□□ 2.26
NPHP4O75161 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
NPHP4O75161 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
NPHP4O75161 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
NPHP4O75161 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
NPHP4O75161 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC29.19■■■□□ 2.26
NPHP4O75161 LTBR-211ENST00000543190 785 ntTSL 3 BASIC29.19■■■□□ 2.26
NPHP4O75161 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC29.19■■■□□ 2.26
NPHP4O75161 FITM1-202ENST00000559294 800 ntBASIC29.19■■■□□ 2.26
NPHP4O75161 AL121894.2-201ENST00000602977 491 ntBASIC29.19■■■□□ 2.26
NPHP4O75161 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC29.19■■■□□ 2.26
NPHP4O75161 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
NPHP4O75161 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC29.19■■■□□ 2.26
NPHP4O75161 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
NPHP4O75161 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC29.18■■■□□ 2.26
NPHP4O75161 STX5-203ENST00000394690 1568 ntTSL 5 BASIC29.18■■■□□ 2.26
NPHP4O75161 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC29.18■■■□□ 2.26
NPHP4O75161 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
NPHP4O75161 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC29.18■■■□□ 2.26
NPHP4O75161 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
NPHP4O75161 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
NPHP4O75161 AC006011.2-201ENST00000621313 1158 ntBASIC29.18■■■□□ 2.26
NPHP4O75161 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC29.17■■■□□ 2.26
NPHP4O75161 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC29.17■■■□□ 2.26
NPHP4O75161 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC29.17■■■□□ 2.26
NPHP4O75161 TMA16-209ENST00000513272 803 ntTSL 2 BASIC29.17■■■□□ 2.26
NPHP4O75161 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC29.17■■■□□ 2.26
NPHP4O75161 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC29.17■■■□□ 2.26
NPHP4O75161 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC29.17■■■□□ 2.26
NPHP4O75161 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
NPHP4O75161 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
NPHP4O75161 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC29.17■■■□□ 2.26
NPHP4O75161 NBPF21P-201ENST00000425093 1451 ntBASIC29.17■■■□□ 2.26
NPHP4O75161 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
NPHP4O75161 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
NPHP4O75161 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC29.16■■■□□ 2.26
NPHP4O75161 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
NPHP4O75161 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC29.15■■■□□ 2.26
NPHP4O75161 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC29.15■■■□□ 2.26
NPHP4O75161 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC29.15■■■□□ 2.26
NPHP4O75161 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC29.15■■■□□ 2.26
NPHP4O75161 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC29.15■■■□□ 2.26
NPHP4O75161 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
NPHP4O75161 PGM5P4-201ENST00000421970 445 ntBASIC29.15■■■□□ 2.26
NPHP4O75161 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC29.15■■■□□ 2.26
NPHP4O75161 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC29.15■■■□□ 2.26
NPHP4O75161 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC29.15■■■□□ 2.26
NPHP4O75161 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
NPHP4O75161 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC29.15■■■□□ 2.26
NPHP4O75161 AC026471.6-201ENST00000622954 1905 ntBASIC29.14■■■□□ 2.26
NPHP4O75161 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
NPHP4O75161 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.26
NPHP4O75161 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
NPHP4O75161 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC29.14■■■□□ 2.26
NPHP4O75161 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC29.14■■■□□ 2.26
NPHP4O75161 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC29.14■■■□□ 2.26
NPHP4O75161 AC010203.1-204ENST00000548782 407 ntBASIC29.14■■■□□ 2.26
NPHP4O75161 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC29.14■■■□□ 2.26
NPHP4O75161 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC29.14■■■□□ 2.26
NPHP4O75161 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC29.14■■■□□ 2.26
NPHP4O75161 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC29.14■■■□□ 2.26
NPHP4O75161 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC29.14■■■□□ 2.26
NPHP4O75161 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC29.14■■■□□ 2.25
NPHP4O75161 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
NPHP4O75161 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
NPHP4O75161 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC29.13■■■□□ 2.25
NPHP4O75161 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
NPHP4O75161 AL356652.1-201ENST00000615962 565 ntBASIC29.13■■■□□ 2.25
NPHP4O75161 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
NPHP4O75161 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
NPHP4O75161 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
NPHP4O75161 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
NPHP4O75161 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
NPHP4O75161 AC092053.2-201ENST00000640557 1818 ntBASIC29.13■■■□□ 2.25
NPHP4O75161 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
NPHP4O75161 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC29.12■■■□□ 2.25
NPHP4O75161 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 NMU-205ENST00000511469 756 ntTSL 3 BASIC29.12■■■□□ 2.25
NPHP4O75161 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC29.12■■■□□ 2.25
NPHP4O75161 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC29.12■■■□□ 2.25
NPHP4O75161 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC29.12■■■□□ 2.25
NPHP4O75161 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC29.12■■■□□ 2.25
NPHP4O75161 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
NPHP4O75161 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC29.12■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms