Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.05■■□□□ 1.28
CHMP2AO43633 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.05■■□□□ 1.28
CHMP2AO43633 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.05■■□□□ 1.28
CHMP2AO43633 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.05■■□□□ 1.28
CHMP2AO43633 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CHMP2AO43633 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.05■■□□□ 1.28
CHMP2AO43633 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CHMP2AO43633 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CHMP2AO43633 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.05■■□□□ 1.28
CHMP2AO43633 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.05■■□□□ 1.28
CHMP2AO43633 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CHMP2AO43633 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.04■■□□□ 1.28
CHMP2AO43633 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.04■■□□□ 1.28
CHMP2AO43633 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CHMP2AO43633 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.04■■□□□ 1.28
CHMP2AO43633 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CHMP2AO43633 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.04■■□□□ 1.28
CHMP2AO43633 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.04■■□□□ 1.28
CHMP2AO43633 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHMP2AO43633 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHMP2AO43633 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.03■■□□□ 1.28
CHMP2AO43633 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CHMP2AO43633 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.03■■□□□ 1.28
CHMP2AO43633 AL589743.5-201ENST00000616611 1050 ntBASIC23.03■■□□□ 1.28
CHMP2AO43633 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.03■■□□□ 1.28
CHMP2AO43633 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CHMP2AO43633 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.03■■□□□ 1.28
CHMP2AO43633 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.03■■□□□ 1.28
CHMP2AO43633 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23.03■■□□□ 1.28
CHMP2AO43633 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.03■■□□□ 1.28
CHMP2AO43633 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CHMP2AO43633 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHMP2AO43633 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
CHMP2AO43633 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CHMP2AO43633 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHMP2AO43633 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.02■■□□□ 1.28
CHMP2AO43633 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHMP2AO43633 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHMP2AO43633 AC073210.2-201ENST00000430369 194 ntBASIC23.02■■□□□ 1.28
CHMP2AO43633 AC091874.3-201ENST00000512672 1195 ntBASIC23.02■■□□□ 1.28
CHMP2AO43633 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.02■■□□□ 1.28
CHMP2AO43633 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHMP2AO43633 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.02■■□□□ 1.28
CHMP2AO43633 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.02■■□□□ 1.28
CHMP2AO43633 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.02■■□□□ 1.28
CHMP2AO43633 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CHMP2AO43633 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CHMP2AO43633 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
CHMP2AO43633 AC087633.2-202ENST00000565166 1439 ntBASIC23.01■■□□□ 1.27
CHMP2AO43633 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CHMP2AO43633 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
CHMP2AO43633 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
CHMP2AO43633 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CHMP2AO43633 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CHMP2AO43633 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CHMP2AO43633 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.01■■□□□ 1.27
CHMP2AO43633 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.01■■□□□ 1.27
CHMP2AO43633 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.01■■□□□ 1.27
CHMP2AO43633 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CHMP2AO43633 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC23.01■■□□□ 1.27
CHMP2AO43633 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.01■■□□□ 1.27
CHMP2AO43633 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CHMP2AO43633 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
CHMP2AO43633 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23■■□□□ 1.27
CHMP2AO43633 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23■■□□□ 1.27
CHMP2AO43633 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23■■□□□ 1.27
CHMP2AO43633 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23■■□□□ 1.27
CHMP2AO43633 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 AC027702.1-201ENST00000563810 1770 ntBASIC23■■□□□ 1.27
CHMP2AO43633 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23■■□□□ 1.27
CHMP2AO43633 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23■■□□□ 1.27
CHMP2AO43633 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23■■□□□ 1.27
CHMP2AO43633 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23■■□□□ 1.27
CHMP2AO43633 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 AC083880.1-201ENST00000608266 535 ntBASIC23■■□□□ 1.27
CHMP2AO43633 AC105020.6-201ENST00000621523 1217 ntBASIC23■■□□□ 1.27
CHMP2AO43633 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23■■□□□ 1.27
CHMP2AO43633 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC22.99■■□□□ 1.27
CHMP2AO43633 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.99■■□□□ 1.27
CHMP2AO43633 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
CHMP2AO43633 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
CHMP2AO43633 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CHMP2AO43633 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms