Protein–RNA interactions for Protein: Q9Y252

RNF6, E3 ubiquitin-protein ligase RNF6, humanhuman

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF6Q9Y252 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF6Q9Y252 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
RNF6Q9Y252 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF6Q9Y252 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF6Q9Y252 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RNF6Q9Y252 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF6Q9Y252 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF6Q9Y252 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF6Q9Y252 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF6Q9Y252 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 AL109923.1-201ENST00000618799 583 ntBASIC19.24■□□□□ 0.67
RNF6Q9Y252 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF6Q9Y252 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF6Q9Y252 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
RNF6Q9Y252 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF6Q9Y252 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF6Q9Y252 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF6Q9Y252 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.23■□□□□ 0.67
RNF6Q9Y252 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 AC006128.1-201ENST00000624704 1661 ntBASIC19.23■□□□□ 0.67
RNF6Q9Y252 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF6Q9Y252 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF6Q9Y252 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF6Q9Y252 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 AL355802.2-201ENST00000402069 882 ntBASIC19.22■□□□□ 0.67
RNF6Q9Y252 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF6Q9Y252 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF6Q9Y252 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF6Q9Y252 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
RNF6Q9Y252 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
RNF6Q9Y252 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
RNF6Q9Y252 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 MIR663A-201ENST00000385250 93 ntBASIC19.21■□□□□ 0.67
RNF6Q9Y252 NCF1B-203ENST00000435988 1254 ntBASIC19.21■□□□□ 0.67
RNF6Q9Y252 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF6Q9Y252 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF6Q9Y252 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RNF6Q9Y252 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF6Q9Y252 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RNF6Q9Y252 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms