Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC25.72■■□□□ 1.71
USP44Q9H0E7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC25.72■■□□□ 1.71
USP44Q9H0E7 AC006128.1-201ENST00000624704 1661 ntBASIC25.72■■□□□ 1.71
USP44Q9H0E7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC25.72■■□□□ 1.71
USP44Q9H0E7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC25.72■■□□□ 1.71
USP44Q9H0E7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
USP44Q9H0E7 MIR2861-201ENST00000636310 90 ntBASIC25.72■■□□□ 1.71
USP44Q9H0E7 MYC-209ENST00000641252 345 ntBASIC25.72■■□□□ 1.71
USP44Q9H0E7 AC133041.1-202ENST00000642053 222 ntBASIC25.72■■□□□ 1.71
USP44Q9H0E7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
USP44Q9H0E7 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP44Q9H0E7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
USP44Q9H0E7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP44Q9H0E7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC25.71■■□□□ 1.71
USP44Q9H0E7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
USP44Q9H0E7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC25.71■■□□□ 1.71
USP44Q9H0E7 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP44Q9H0E7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC25.71■■□□□ 1.71
USP44Q9H0E7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
USP44Q9H0E7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC25.71■■□□□ 1.71
USP44Q9H0E7 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC25.71■■□□□ 1.71
USP44Q9H0E7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP44Q9H0E7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC25.7■■□□□ 1.71
USP44Q9H0E7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC25.7■■□□□ 1.71
USP44Q9H0E7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC25.7■■□□□ 1.71
USP44Q9H0E7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC25.7■■□□□ 1.7
USP44Q9H0E7 APTR-205ENST00000447009 902 ntTSL 2 BASIC25.7■■□□□ 1.7
USP44Q9H0E7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC25.7■■□□□ 1.7
USP44Q9H0E7 OR2A1-AS1-201ENST00000462305 773 ntBASIC25.7■■□□□ 1.7
USP44Q9H0E7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC25.7■■□□□ 1.7
USP44Q9H0E7 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC25.7■■□□□ 1.7
USP44Q9H0E7 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC25.7■■□□□ 1.7
USP44Q9H0E7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC25.7■■□□□ 1.7
USP44Q9H0E7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
USP44Q9H0E7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
USP44Q9H0E7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP44Q9H0E7 AL121603.2-201ENST00000557373 2117 ntBASIC25.69■■□□□ 1.7
USP44Q9H0E7 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP44Q9H0E7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP44Q9H0E7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC25.69■■□□□ 1.7
USP44Q9H0E7 LSM12P1-201ENST00000411836 588 ntBASIC25.69■■□□□ 1.7
USP44Q9H0E7 DUSP5P2-201ENST00000426873 1033 ntBASIC25.69■■□□□ 1.7
USP44Q9H0E7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC25.69■■□□□ 1.7
USP44Q9H0E7 AC091874.3-201ENST00000512672 1195 ntBASIC25.69■■□□□ 1.7
USP44Q9H0E7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP44Q9H0E7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP44Q9H0E7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC25.69■■□□□ 1.7
USP44Q9H0E7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC25.69■■□□□ 1.7
USP44Q9H0E7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP44Q9H0E7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP44Q9H0E7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
USP44Q9H0E7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
USP44Q9H0E7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC25.68■■□□□ 1.7
USP44Q9H0E7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC25.68■■□□□ 1.7
USP44Q9H0E7 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP44Q9H0E7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP44Q9H0E7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
USP44Q9H0E7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC25.68■■□□□ 1.7
USP44Q9H0E7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP44Q9H0E7 AL589743.5-201ENST00000616611 1050 ntBASIC25.68■■□□□ 1.7
USP44Q9H0E7 AC105020.6-201ENST00000621523 1217 ntBASIC25.68■■□□□ 1.7
USP44Q9H0E7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC25.68■■□□□ 1.7
USP44Q9H0E7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP44Q9H0E7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP44Q9H0E7 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP44Q9H0E7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC25.67■■□□□ 1.7
USP44Q9H0E7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
USP44Q9H0E7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USP44Q9H0E7 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP44Q9H0E7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP44Q9H0E7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
USP44Q9H0E7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC25.67■■□□□ 1.7
USP44Q9H0E7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC25.67■■□□□ 1.7
USP44Q9H0E7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC25.67■■□□□ 1.7
USP44Q9H0E7 AC083880.1-201ENST00000608266 535 ntBASIC25.67■■□□□ 1.7
USP44Q9H0E7 AL356652.1-201ENST00000615962 565 ntBASIC25.67■■□□□ 1.7
USP44Q9H0E7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP44Q9H0E7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP44Q9H0E7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC25.66■■□□□ 1.7
USP44Q9H0E7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP44Q9H0E7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC25.66■■□□□ 1.7
USP44Q9H0E7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC25.66■■□□□ 1.7
USP44Q9H0E7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC25.66■■□□□ 1.7
USP44Q9H0E7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP44Q9H0E7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP44Q9H0E7 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP44Q9H0E7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP44Q9H0E7 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP44Q9H0E7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC25.66■■□□□ 1.7
USP44Q9H0E7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC25.66■■□□□ 1.7
USP44Q9H0E7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC25.66■■□□□ 1.7
USP44Q9H0E7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms