Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SCAPERQ9BY12 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 ARMC10P1-201ENST00000313754 855 ntBASIC31.16■■■□□ 2.58
SCAPERQ9BY12 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC31.16■■■□□ 2.58
SCAPERQ9BY12 P4HB-223ENST00000576390 439 ntTSL 4 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 AF186192.3-201ENST00000583427 947 ntBASIC31.15■■■□□ 2.58
SCAPERQ9BY12 AC145285.6-201ENST00000604632 637 ntBASIC31.15■■■□□ 2.58
SCAPERQ9BY12 MIR6786-201ENST00000616843 113 ntBASIC31.15■■■□□ 2.58
SCAPERQ9BY12 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 Six3os1_6.1-201ENST00000620790 196 ntBASIC31.15■■■□□ 2.58
SCAPERQ9BY12 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
SCAPERQ9BY12 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC31.14■■■□□ 2.58
SCAPERQ9BY12 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
SCAPERQ9BY12 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 AL049597.2-201ENST00000565575 961 ntBASIC31.13■■■□□ 2.57
SCAPERQ9BY12 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 AC080038.3-201ENST00000623346 1952 ntBASIC31.13■■■□□ 2.57
SCAPERQ9BY12 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
SCAPERQ9BY12 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 AL390719.1-204ENST00000412397 1219 ntBASIC31.12■■■□□ 2.57
SCAPERQ9BY12 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC31.12■■■□□ 2.57
SCAPERQ9BY12 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 FAM99A-202ENST00000538190 1989 ntBASIC31.11■■■□□ 2.57
SCAPERQ9BY12 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 RPS15-203ENST00000586096 570 ntTSL 2 BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 KRT8P9-201ENST00000558927 1449 ntBASIC31.11■■■□□ 2.57
SCAPERQ9BY12 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SCAPERQ9BY12 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SCAPERQ9BY12 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
SCAPERQ9BY12 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC31.1■■■□□ 2.57
SCAPERQ9BY12 AL355355.2-201ENST00000442321 338 ntBASIC31.1■■■□□ 2.57
SCAPERQ9BY12 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SCAPERQ9BY12 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
SCAPERQ9BY12 AL356652.1-201ENST00000615962 565 ntBASIC31.1■■■□□ 2.57
SCAPERQ9BY12 AL590326.2-201ENST00000625139 305 ntBASIC31.1■■■□□ 2.57
SCAPERQ9BY12 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SCAPERQ9BY12 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC31.1■■■□□ 2.57
SCAPERQ9BY12 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SCAPERQ9BY12 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC31.09■■■□□ 2.57
SCAPERQ9BY12 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC31.09■■■□□ 2.57
SCAPERQ9BY12 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC31.09■■■□□ 2.57
SCAPERQ9BY12 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
SCAPERQ9BY12 HTR7P1-201ENST00000538670 1336 ntBASIC31.09■■■□□ 2.57
SCAPERQ9BY12 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SCAPERQ9BY12 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SCAPERQ9BY12 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC31.08■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms